Safaai Deris

According to our database1, Safaai Deris authored at least 116 papers between 1996 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of five.

Timeline

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Bibliography

2019
Cooperative enhanced scatter search with opposition-based learning schemes for parameter estimation in high dimensional kinetic models of biological systems.
Expert Syst. Appl., 2019

A non-dominated sorting Differential Search Algorithm Flux Balance Analysis (ndsDSAFBA) for <i>in silico</i> multiobjective optimization in identifying reactions knockout.
Comput. Biol. Medicine, 2019

2018
NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Requirements engineering of Malaysian radiological medical emergency response simulator.
J. Inf. Telecommun., 2018

A hybrid of Cuckoo Search and Minimization of Metabolic Adjustment to optimize metabolites production in genome-scale models.
Comput. Biol. Medicine, 2018

Parameter Estimation of Essential Amino Acids in Arabidopsis thaliana Using Hybrid of Bees Algorithm and Harmony Search.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

2017
Samira-VP: A simple protein alignment method with rechecking the alphabet vector positions.
J. Bioinform. Comput. Biol., 2017

Automated path testing using the negative selection algorithm.
Int. J. Comput. Vis. Robotics, 2017

An enhanced scatter search with combined opposition-based learning for parameter estimation in large-scale kinetic models of biochemical systems.
Eng. Appl. Artif. Intell., 2017

An improved hybrid of particle swarm optimization and the gravitational search algorithm to produce a kinetic parameter estimation of aspartate biochemical pathways.
Biosyst., 2017

K-Means Clustering with Infinite Feature Selection for Classification Tasks in Gene Expression Data.
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

Classification of Colorectal Cancer Using Clustering and Feature Selection Approaches.
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

2016
An improved gSVM-SCADL2 with firefly algorithm for identification of informative genes and pathways.
Int. J. Bioinform. Res. Appl., 2016

Identification of informative genes and pathways using an improved penalized support vector machine with a weighting scheme.
Comput. Biol. Medicine, 2016

Application of Negative Selection Algorithm (NSA) for test data generation of path testing.
Appl. Soft Comput., 2016

A Hybrid of Harmony Search and Minimization of Metabolic Adjustment for Optimization of Succinic Acid Production.
Proceedings of the 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2016

Exploring the High Performance Computing-Enablement of a Suite of Gene-Knockout Based Genetic Engineering Applications.
Proceedings of the 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2016

Investigation of the Effects of Imputation Methods for Gene Regulatory Networks Modelling Using Dynamic Bayesian Networks.
Proceedings of the Distributed Computing and Artificial Intelligence, 2016

2015
Metabolites production improvement by identifying minimal genomes and essential genes using flux balance analysis.
Int. J. Data Min. Bioinform., 2015

2014
A group-specific tuning parameter for hybrid of SVM and SCAD in identification of informative genes and pathways.
Int. J. Data Min. Bioinform., 2014

A hybrid of bees algorithm and flux balance analysis (BAFBA) for the optimisation of microbial strains.
Int. J. Data Min. Bioinform., 2014

An improved differential evolution algorithm for enhancing biochemical pathways simulation and production.
Int. J. Data Min. Bioinform., 2014

A hybrid of ant colony optimization and minimization of metabolic adjustment to improve the production of succinic acid in Escherichia coli.
Comput. Biol. Medicine, 2014

A review on the computational approaches for gene regulatory network construction.
Comput. Biol. Medicine, 2014

Identification of gene knockout strategies using a hybrid of an ant colony optimization algorithm and flux balance analysis to optimize microbial strains.
Comput. Biol. Chem., 2014

Systematic Mapping Study in Automatic Test Case Generation.
Proceedings of the New Trends in Software Methodologies, Tools and Techniques, 2014

Requirements Engineering of Malaysia's Radiation and Nuclear Emergency Plan Simulator.
Proceedings of the Intelligent Software Methodologies, Tools and Techniques, 2014

Requirements Engineering of Malaysia Radiation and Nuclear Emergency Plan Simulator.
Proceedings of the New Trends in Software Methodologies, Tools and Techniques, 2014

Inferring gene regulatory networks from perturbed gene expression data using a dynamic Bayesian network with a Markov Chain Monte Carlo algorithm.
Proceedings of the 2014 IEEE International Conference on Granular Computing, 2014

A gene knockout strategy for succinate production using a hybrid algorithm of bees algorithm and minimization of metabolic adjustment.
Proceedings of the 2014 IEEE International Conference on Granular Computing, 2014

2013
A context evaluation approach for structural comparison of proteins using cross entropy over n-gram modelling.
Comput. Biol. Medicine, 2013

Multi-stage filtering for improving confidence level and determining dominant clusters in clustering algorithms of gene expression data.
Comput. Biol. Medicine, 2013

An enhancement of binary particle swarm optimization for gene selection in classifying cancer classes.
Algorithms Mol. Biol., 2013

An artificial immune system for solving production scheduling problems: a review.
Artif. Intell. Rev., 2013

Parameter Estimation Using Improved Differential Evolution (IDE) and Bacterial Foraging Algorithm to Model Tyrosine Production in Mus Musculus (Mouse).
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Multiclass Prediction for Cancer Microarray Data Using Various Variables Range Selection Based on Random Forest.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

A Constraint and Rule in an Enhancement of Binary Particle Swarm Optimization to Select Informative Genes for Cancer Classification.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

A Hybrid of SVM and SCAD with Group-Specific Tuning Parameters in Identification of Informative Genes and Biological Pathways.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Identifying Gene Knockout Strategy Using Bees Hill Flux Balance Analysis (BHFBA) for Improving the Production of Succinic Acid and Glycerol in Saccharomyces cerevisiae.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Threonine Biosynthesis Pathway Simulation Using IBMDE with Parameter Estimation.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Modelling Gene Networks by a Dynamic Bayesian Network-Based Model with Time Lag Estimation.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Prediction of Vanillin Production in Yeast Using a Hybrid of Continuous Bees Algorithm and Flux Balance Analysis (CBAFBA).
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Using Ant Colony Optimization (ACO) on Kinetic Modeling of the Acetoin Production in Lactococcus Lactis C7.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Using Particle Swarm Optimization for Estimating Kinetics Parameters on Essential Amino Acid Production of Arabidopsis Thaliana.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Inferring Gene Networks from Gene Expression Data Using Dynamic Bayesian Network with Different Scoring Metric Approaches.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

A Hybrid of Artificial Bee Colony and Flux Balance Analysis for Identifying Optimum Knockout Strategies for Producing High Yields of Lactate in Echerichia Coli.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Identifying Gene Knockout Strategy Using Bees Hill Flux Balance Analysis (BHFBA) for Improving the Production of Ethanol in Bacillus Subtilis.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Inferring E. coli SOS Response Pathway from Gene Expression Data Using IST-DBN with Time Lag Estimation.
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013

Identifying Minimal Genomes and Essential Genes in Metabolic Model Using Flux Balance Analysis.
Proceedings of the Intelligent Information and Database Systems - 5th Asian Conference, 2013

Multiple Gene Sets for Cancer Classification Using Gene Range Selection Based on Random Forest.
Proceedings of the Intelligent Information and Database Systems - 5th Asian Conference, 2013

Using Bees Hill Flux Balance Analysis (BHFBA) for in silico Microbial Strain Optimization.
Proceedings of the Intelligent Information and Database Systems - 5th Asian Conference, 2013

2012
The inference of breast cancer metastasis through gene regulatory networks.
J. Biomed. Informatics, 2012

Improved Differential Evolution Algorithm for Parameter Estimation to Improve the Production of Biochemical Pathway.
Int. J. Interact. Multim. Artif. Intell., 2012

TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison.
Algorithms Mol. Biol., 2012

Automated biological pathway knowledge retrieval based on semantic web services composition and AI Planning.
Proceedings of the 2012 International Conference on Information Retrieval & Knowledge Management, 2012

A Hybrid of SVM and SCAD with Group-Specific Tuning Parameter for Pathway-Based Microarray Analysis.
Proceedings of the Distributed Computing and Artificial Intelligence, 2012

Identifying Gene Knockout Strategies Using a Hybrid of Bees Algorithm and Flux Balance Analysis for in Silico Optimization of Microbial Strains.
Proceedings of the Distributed Computing and Artificial Intelligence, 2012

Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway.
Proceedings of the Distributed Computing and Artificial Intelligence, 2012

Inferring Gene Regulatory Networks from Gene Expression Data by a Dynamic Bayesian Network-Based Model.
Proceedings of the Distributed Computing and Artificial Intelligence, 2012

A New Hybrid Firefly Algorithm for Complex and Nonlinear Problem.
Proceedings of the Distributed Computing and Artificial Intelligence, 2012

2011
A Modified Binary Particle Swarm Optimization for Selecting the Small Subset of Informative Genes From Gene Expression Data.
IEEE Trans. Inf. Technol. Biomed., 2011

Synergy network based inference for breast cancer metastasis.
Proceedings of the First World Conference on Information Technology, 2011

Web Services Non-Functional Classification to Enhance Discovery Speed
CoRR, 2011

A Novel Image Segmentation Enhancement Technique based on Active Contour and Topological Alignments
CoRR, 2011

Parameter Estimation for Simulation of Glycolysis Pathway by Using an Improved Differential Evolution.
Proceedings of the Knowledge Technology - Third Knowledge Technology Week, 2011

An improved local best searching in Particle Swarm Optimization using Differential Evolution.
Proceedings of the 11th International Conference on Hybrid Intelligent Systems, 2011

Machine Loading Optimization in Flexible Manufacturing System Using a Hybrid of Bio-inspired and Musical-Composition Approach.
Proceedings of the Sixth International Conference on Bio-Inspired Computing: Theories and Applications, 2011

2010
Particle swarm optimization with a modified sigmoid function for gene selection from gene expression data.
Artif. Life Robotics, 2010

Protein Structure Modeling in Two-Level Topology Strings for Structure Comparison.
Proceedings of the Sixth International Conference on Signal-Image Technology and Internet-Based Systems, 2010

Selecting Genes from Gene Expression Data by using an Enhancement of Binary Particle Swarm Optimization for Cancer Classification.
Proceedings of the ICAART 2010 - Proceedings of the International Conference on Agents and Artificial Intelligence, Volume 1, 2010

A New Computational Framework for Gene Expression Clustering.
Proceedings of the Advanced Data Mining and Applications - 6th International Conference, 2010

2009
Particle swarm optimization for gene selection in classifying cancer classes.
Artif. Life Robotics, 2009

Gene subset selection using an iterative approach based on genetic algorithms.
Artif. Life Robotics, 2009

Selecting informative genes from microarray data by using hybrid methods for cancer classification.
Artif. Life Robotics, 2009

A multi-objective strategy in genetic algorithms for gene selection of gene expression data.
Artif. Life Robotics, 2009

Text-Based Protein Structure Modeling for Structure Comparison.
Proceedings of the First International Conference of Soft Computing and Pattern Recognition, 2009

An Improved Binary Particle Swarm Optimisation for Gene Selection in Classifying Cancer Classes.
Proceedings of the Distributed Computing, 2009

An Iterative GASVM-Based Method: Gene Selection and Classification of Microarray Data.
Proceedings of the Distributed Computing, 2009

University course timetable planning using hybrid particle swarm optimization.
Proceedings of the first ACM/SIGEVO Summit on Genetic and Evolutionary Computation, 2009

Constraint-Based Genetic Algorithms for Machine Requirement of Semiconductor Assembly Industry: A Proposed Framework.
Proceedings of the Third Asia International Conference on Modelling & Simulation, 2009

Propagating Requirement Change into Software High Level Designs towards Resilient Software Evolution.
Proceedings of the 16th Asia-Pacific Software Engineering Conference, 2009

Requirements Identification and Representation in Software Product Line.
Proceedings of the 16th Asia-Pacific Software Engineering Conference, 2009

2008
A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.
J. Biomed. Informatics, 2008

Autonomous Notification and Situation Reporting for Flood Disaster Management.
Comput. Inf. Sci., 2008

Early-Life Cycle Reuse Approach for Component-Based Software of Autonomous Mobile Robot System.
Proceedings of the Ninth ACIS International Conference on Software Engineering, 2008

A Recursive Genetic Algorithm to Automatically Select Genes for Cancer Classification.
Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008

Combining Clustering and Bayesian Network for Gene Network Inference.
Proceedings of the Eighth International Conference on Intelligent Systems Design and Applications, 2008

Rescheduling for Manufacturing Based on Ontology and Problem Solving Method.
Proceedings of the Eighth International Conference on Intelligent Systems Design and Applications, 2008

The Concept of Bio-fitness in Bio-inspired Computational Metaphor Abstraction.
Proceedings of the Wireless Networks, 2008

Comparative Evaluation of Change Propagation Approaches towards Resilient Software Evolution.
Proceedings of the Third International Conference on Software Engineering Advances, 2008

A novel method for protein 3D-structure similarity measure based on n-gram modeling.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

An Approach Using Hybrid Methods to Select Informative Genes from Microarray Data for Cancer Classification.
Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008

2007
Pattern-Oriented Design for Multi-Agent System: A Conceptual Model.
J. Object Technol., 2007

Software Reuse for Mobile Robot Applications Through Analysis Patterns.
Int. Arab J. Inf. Technol., 2007

A model for gene selection and classification of gene expression data.
Artif. Life Robotics, 2007

Towards Evaluation of Inferred Gene Network.
Proceedings of the Selected Papers of the Fifth International Conference on, 2007

Blind Test Is A Pragmatic Test for A New Protein Secondary Structure Classifier.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

SubSS: A Protein-Protein Interaction Detection Tool.
Proceedings of the 6th Annual IEEE/ACIS International Conference on Computer and Information Science (ICIS 2007), 2007

2006
Pattern-Oriented Design for Multi-Agent System : A Process Framework.
Proceedings of the International Conference on Software Engineering Research and Practice & Conference on Programming Languages and Compilers, 2006

Web-Based Support System for Flood Response Operation.
Proceedings of the 2006 IEEE/WIC/ACM International Conference on Intelligent Agent Technology, 2006

Towards estimating gene network using structure learning.
Proceedings of the Second IASTED International Conference on Computational Intelligence, 2006

Protein Secondary Structure Prediction Accuracy versus Reduction Methods.
Proceedings of the 2006 International Conference on Computer Design & Conference on Computing in Nanotechnology, 2006

Protein Secondary Structure Reduction Methods Significantly Affect Prediction Accuracy.
Proceedings of the 2006 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2006), 2006

Agent Design Patterns Framework for MaSE/POAD Methodology.
Proceedings of the 2006 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2006), 2006

Enhancements of PECOS Embedded Real-Time Component Model for Autonomous Mobile Robot Application.
Proceedings of the 2006 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2006), 2006

2005
Combining Artificial Neural Networks and GOR-V Information Theory to Predict Protein Secondary Structure from Amino Acid Sequences.
Int. J. Intell. Inf. Technol., 2005

A Hybrid of Genetic Algorithm and Support Vector Machine for Features Selection and Classification of Gene Expression Microarray.
Int. J. Comput. Intell. Appl., 2005

Combining Three Scoring Algorithms for Representing Protein Sequence.
Proceedings of the 2005 International Conference on Artificial Intelligence, 2005

Towards a Reusable and Maintainable Multiagent System Engineering (MaSE) Methodology.
Proceedings of the 2005 International Conference on Artificial Intelligence, 2005

2004
Features Extraction For Protein Homology Detection Using Hidden Markov Models Combining Scores.
Int. J. Comput. Intell. Appl., 2004

2002
Rough Set on Trademark Images for Neural Network Classifier.
Int. J. Comput. Math., 2002

2000
Timetable planning using the constraint-based reasoning.
Comput. Oper. Res., 2000

1999
Ship maintenance scheduling by genetic algorithm and constraint-based reasoning.
Eur. J. Oper. Res., 1999

1997
Object-oriented constraint logic programming for timetable planning.
Int. J. Syst. Sci., 1997

A Constraint-Directed Genetic Algorithm for University Timetable Planning.
Proceedings of the Progress in Connectionist-Based Information Systems: Proceedings of the 1997 International Conference on Neural Information Processing and Intelligent Information Systems, 1997

1996
Stabilization of Inverted Pendulum by the Genetic Algorithm.
Proceedings of 1996 IEEE International Conference on Evolutionary Computation, 1996


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