Sam Abbott

According to our database, Sam Abbott authored at least 10 papers between 2019 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany.

Elisabeth K. Brockhaus, Daniel Wolffram, Tanja Stadler, Michael Osthege, Tanmay Mitra, Jonas M. Littek, Ekaterina A. Krymova, Anna J. Klesen, Jana S. Huisman, Stefan Heyder, Laura Marie Helleckes, Matthias an der Heiden, Sebastian Funk, Sam Abbott, Johannes Bracher

PLoS Comput. Biol., November, 2023

Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.

Daniel Wolffram, Sam Abbott, Matthias an der Heiden, Sebastian Funk, Felix Günther, Davide Hailer, Stefan Heyder, Thomas Hotz, Jan van de Kassteele, Helmut Küchenhoff, Sören Müller-Hansen, Diellë Syliqi, Alexander Ullrich, Maximilian Weigert, Melanie Schienle, Johannes Bracher

PLoS Comput. Biol., 2023

Nowcasting the 2022 mpox outbreak in England.

Christopher E. Overton, Sam Abbott, Rachel Christie, Fergus Cumming, Julie Day, Owen Jones, Rob Paton, Charlie Turner, Thomas Ward

PLoS Comput. Biol., 2023

Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England.

James D. Munday, Sam Abbott, Sophie Meakin, Sebastian Funk

PLoS Comput. Biol., 2023

Scoring epidemiological forecasts on transformed scales.

Nikos I. Bosse, Sam Abbott, Anne Cori, Edwin van Leeuwen, Johannes Bracher, Sebastian Funk

PLoS Comput. Biol., 2023

2022

Comparing human and model-based forecasts of COVID-19 in Germany and Poland.

Nikos I. Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J. Quilty, Mark Jit, Edwin van Leeuwen, Anne Cori, Sebastian Funk

PLoS Comput. Biol., September, 2022

2021

Correction: Practical considerations for measuring the effective reproductive number, Rt.

Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey

PLoS Comput. Biol., 2021

covidregionaldata: Subnational data for COVID-19 epidemiology.

Joseph Palmer, Katharine Sherratt, Richard Martin-Nielson, Jonnie Bevan, Hamish Gibbs, LSHTM CMMID COVID-19 Working Group, Sebastian Funk, Sam Abbott

J. Open Source Softw., 2021

2020

Practical considerations for measuring the effective reproductive number, Rt.

Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey

PLoS Comput. Biol., 2020

2019

getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data.

Sam Abbott

J. Open Source Softw., 2019