Sebastian Bonhoeffer

Orcid: 0000-0001-8052-3925

According to our database1, Sebastian Bonhoeffer authored at least 24 papers between 1995 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
estimateR: an R package to estimate and monitor the effective reproductive number.
BMC Bioinform., December, 2023

2022
Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems.
PLoS Comput. Biol., 2022

2021
Correction: Practical considerations for measuring the effective reproductive number, Rt.
PLoS Comput. Biol., 2021

Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches.
PLoS Comput. Biol., 2021

2020
Practical considerations for measuring the effective reproductive number, Rt.
PLoS Comput. Biol., 2020

2019
A time resolved clustering method revealing longterm structures and their short-term internal dynamics.
CoRR, 2019

2018
Assessing the public health impact of tolerance-based therapies with mathematical models.
PLoS Comput. Biol., 2018

2017
Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies.
PLoS Comput. Biol., 2017

Short-term activity cycles impede information transmission in ant colonies.
PLoS Comput. Biol., 2017

Host population structure impedes reversion to drug sensitivity after discontinuation of treatment.
PLoS Comput. Biol., 2017

Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments.
PLoS Comput. Biol., 2017

2016
The Role of Adherence and Retreatment in <i>De Novo</i> Emergence of MDR-TB.
PLoS Comput. Biol., 2016

2015
From "What Is?" to "What Isn't?" Computational Biology.
PLoS Comput. Biol., 2015

Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy.
PLoS Comput. Biol., 2015

2014
Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models.
PLoS Comput. Biol., 2014

2012
Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase.
PLoS Comput. Biol., 2012

Inferring Epidemic Contact Structure from Phylogenetic Trees.
PLoS Comput. Biol., 2012

Evolution of Stress Response in the Face of Unreliable Environmental Signals.
PLoS Comput. Biol., 2012

2011
Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards.
PLoS Comput. Biol., 2011

2010
Evolution of Recombination on an HIV-1 Derived Fitness Landscape.
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, 2010

2009
Predicting the Evolution of Sex on Complex Fitness Landscapes.
PLoS Comput. Biol., 2009

Red Queen Dynamics with Non-Standard Fitness Interactions.
PLoS Comput. Biol., 2009

2006
High Epitope Expression Levels Increase Competition between T Cells.
PLoS Comput. Biol., 2006

1995
Spatial Games and Evolution of Cooperation.
Proceedings of the Advances in Artificial Life, 1995


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