Sarah Berkemer

According to our database, Sarah Berkemer authored at least 8 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Infrared: a declarative tree decomposition-powered framework for bioinformatics.

Hua-Ting Yao, Bertrand Marchand, Sarah J. Berkemer, Yann Ponty, Sebastian Will

Algorithms Mol. Biol., December, 2024

2023

Automated design of dynamic programming schemes for RNA folding with pseudoknots.

Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Yann Ponty, Laurent Bulteau

Algorithms Mol. Biol., December, 2023

2021

Compositional Properties of Alignments.

Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler

Math. Comput. Sci., 2021

2019

Towards Dynamic Programming on Generalized Data Structures: and Applications of Dynamic Programming in Bioinformatics

Sarah Berkemer

PhD thesis, 2019

2018

Alignments as Compositional Structures.

Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler

CoRR, 2018

2017

Algebraic Dynamic Programming on Trees.

Sarah Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler

Algorithms, 2017

2015

Spiders can be Recognized by Counting Their Legs.

Sarah Berkemer, Ricardo Régis Cavalcante Chaves, Adrian Fritz, Marc Hellmuth, Maribel Hernandez-Rosales, Peter F. Stadler

Math. Comput. Sci., 2015

2014

Comparative Detection of Processed Small RNAs in Archaea.

Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014