Sepideh Babaei

According to our database, Sepideh Babaei authored at least 12 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

S³-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue.

Sepideh Babaei, Jonathan Christ, Vivek Sehra, Ahmad Makky, Mohammed Zidane, Kilian Wistuba-Hamprecht, Christian M. Schürch, Manfred Claassen

Patterns, September, 2023

A review on deep learning applications in highly multiplexed tissue imaging data analysis.

Mohammed Zidane, Ahmad Makky, Matthias Bruhns, Alexander Rochwarger, Sepideh Babaei, Manfred Claassen, Christian M. Schürch

Frontiers Bioinform., May, 2023

2015

Multi-scale network analyses for cancer omics data.

Sepideh Babaei

PhD thesis, 2015

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P. F. Lelieveldt, Jeroen de Ridder, Marcel J. T. Reinders

PLoS Comput. Biol., 2015

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia.

Erdogan Taskesen, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder

BMC Bioinform., 2015

Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014.

Margherita Francescatto, Susanne M. A. Hermans, Sepideh Babaei, Esmeralda Vicedo, Alexandre Borrel, Pieter Meysman

BMC Bioinform., 2015

2013

Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.

Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder

BMC Bioinform., 2013

2012

Towards designing modular recurrent neural networks in learning protein secondary structures.

Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi

Expert Syst. Appl., 2012

2011

Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis.

Sepideh Babaei, Erik van den Akker, Jeroen de Ridder, Marcel J. T. Reinders

Proceedings of the Pattern Recognition in Bioinformatics, 2011

2010

Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks.

Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi

Comput. Methods Programs Biomed., 2010

2009

Heart sound reproduction based on neural network classification of cardiac valve disorders using wavelet transforms of PCG signals.

Sepideh Babaei, Amir Geranmayeh

Comput. Biol. Medicine, 2009

2008

Pruning neural networks for protein secondary structure prediction.

Sepideh Babaei, Seyyed Ali Seyyedsalehi, Amir Geranmayeh

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008