Marcel J. T. Reinders

According to our database1, Marcel J. T. Reinders authored at least 145 papers between 1992 and 2020.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Homepage:

On csauthors.net:

Bibliography

2020
Metric learning on expression data for gene function prediction.
Bioinform., 2020

ImSpectR: R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data.
Bioinform., 2020

PREDICT: Efficient Private Disease Susceptibility Testing in Direct-to-Consumer Model.
Proceedings of the CODASPY '20: Tenth ACM Conference on Data and Application Security and Privacy, 2020

2019
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr., 2019

PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors.
Bioinform., 2019

Improving protein function prediction using protein sequence and GO-term similarities.
Bioinform., 2019

CyTOFmerge: integrating mass cytometry data across multiple panels.
Bioinform., 2019

2018
Bioinformatics in the Netherlands: the value of a nationwide community.
Briefings Bioinform., 2018

2017
Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies.
NeuroImage, 2017

2016
ECCB 2016: The 15th European Conference on Computational Biology.
Bioinform., 2016

2015
Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data.
PLoS Comput. Biol., 2015

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.
PLoS Comput. Biol., 2015

An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia.
BMC Bioinform., 2015

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia.
BMC Bioinform., 2015

Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level.
Bioinform., 2015

2014
SPiCE: a web-based tool for sequence-based protein classification and exploration.
BMC Bioinform., 2014

Genomic connectivity networks based on the BrainSpan atlas of the developing human brain.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

The Effect of Aggregating Subtype Performances Depends Strongly on the Performance Measure Used.
Proceedings of the 22nd International Conference on Pattern Recognition, 2014

2013
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels.
Int. J. Bioinform. Res. Appl., 2013

Topology of molecular interaction networks.
BMC Syst. Biol., 2013

Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.
BMC Bioinform., 2013

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold.
Bioinform., 2013

Pattern recognition in bioinformatics.
Briefings Bioinform., 2013

Local Topological Signatures for Network-Based Prediction of Biological Function.
Proceedings of the Pattern Recognition in Bioinformatics, 2013

Mutational Genomics for Cancer Pathway Discovery.
Proceedings of the Pattern Recognition in Bioinformatics, 2013

Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization.
Proceedings of the Pattern Recognition in Bioinformatics, 2013

Conditional Random Fields for Protein Function Prediction.
Proceedings of the Pattern Recognition in Bioinformatics, 2013

Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data.
Proceedings of the Data Integration in the Life Sciences - 9th International Conference, 2013

2012
<i>De novo</i> detection of copy number variation by co-assembly.
Bioinform., 2012

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Bioinform., 2012

Enabling large genomic data transfers using nation-wide and international dynamic lightpaths.
Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011
Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Human-inspired search for redundancy in automatic sign language recognition.
ACM Trans. Appl. Percept., 2011

Metabolic network destruction: Relating topology to robustness.
Nano Commun. Networks, 2011

Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis.
J. Integr. Bioinform., 2011

Personalised Travel Recommendation based on Location Co-occurrence
CoRR, 2011

CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages.
Bioinform., 2011

Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis.
Proceedings of the Pattern Recognition in Bioinformatics, 2011

2010
The task-dependent effect of tags and ratings on social media access.
ACM Trans. Inf. Syst., 2010

Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach.
PLoS Comput. Biol., 2010

Personalization of tagging systems.
Inf. Process. Manag., 2010

The influence of personalization on tag query length in social media search.
Inf. Process. Manag., 2010

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data.
BMC Bioinform., 2010

Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization.
BMC Bioinform., 2010

Inferring combinatorial association logic networks in multimodal genome-wide screens.
Bioinform., 2010

Integrating genome assemblies with MAIA.
Bioinform., 2010

Using flickr geotags to predict user travel behaviour.
Proceedings of the Proceeding of the 33rd International ACM SIGIR Conference on Research and Development in Information Retrieval, 2010

Sequence-Based Prediction of Protein Secretion Success in <i>Aspergillus niger</i>.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

Subtype specific breast cancer event prediction.
Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

Finding Wormholes with Flickr Geotags.
Proceedings of the Advances in Information Retrieval, 2010

2009
Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks.
EURASIP J. Bioinform. Syst. Biol., 2009

Knowledge driven decomposition of tumor expression profiles.
BMC Bioinform., 2009

A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability.
BMC Bioinform., 2009

Analysis of mass spectrometry data using sub-spectra.
BMC Bioinform., 2009

Fewer permutations, more accurate <i>P</i>-values.
Bioinform., 2009

Metabolite and reaction inference based on enzyme specificities.
Bioinform., 2009

Exploiting Positive and Negative Graded Relevance Assessments for Content Recommendation.
Proceedings of the Algorithms and Models for the Web-Graph, 6th International Workshop, 2009

2D/3D Registration of Micro-CT Data to Multi-View Photographs Based on a 3D Distance Map.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Sign language perception research for improving automatic sign language recognition.
Proceedings of the Human Vision and Electronic Imaging XIV, 2009

Influence of Handshape Information on Automatic Sign Language Recognition.
Proceedings of the Gesture in Embodied Communication and Human-Computer Interaction, 2009

A sensitivity analysis of microarray feature selection and classification under measurement noise.
Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

Personalization on a Peer-to-Peer Television System.
Proceedings of the Handbook of Multimedia for Digital Entertainment and Arts, 2009

2008
Wi-Fi Walkman.
Encyclopedia of Wireless and Mobile Communications, 2008

Unified relevance models for rating prediction in collaborative filtering.
ACM Trans. Inf. Syst., 2008

Erratum to "Classification in the presence of class noise using a probabilistic kernel fisher method": [Pattern Recognition 40 (12) 3349-3357].
Pattern Recognit., 2008

Integration of prior knowledge of measurement noise in kernel density classification.
Pattern Recognit., 2008

Sign Language Recognition by Combining Statistical DTW and Independent Classification.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

Personalization on a peer-to-peer television system.
Multim. Tools Appl., 2008

Probabilistic relevance ranking for collaborative filtering.
Inf. Retr., 2008

Creating gene set activity profiles with time-series expression data.
Int. J. Bioinform. Res. Appl., 2008

TRIBLER: a social-based peer-to-peer system.
Concurr. Comput. Pract. Exp., 2008

Metabolic pathway alignment between species using a comprehensive and flexible similarity measure.
BMC Syst. Biol., 2008

Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data.
BMC Bioinform., 2008

Detecting synonyms in social tagging systems to improve content retrieval.
Proceedings of the 31st Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2008

Combinatorial influence of environmental parameters on transcription factor activity.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Learning to recognize a sign from a single example.
Proceedings of the 8th IEEE International Conference on Automatic Face and Gesture Recognition (FG 2008), 2008

A learning environment for sign language.
Proceedings of the 8th IEEE International Conference on Automatic Face and Gesture Recognition (FG 2008), 2008

Stability cannot be derived from local structure in biochemical networks.
Proceedings of the 3rd International ICST Conference on Bio-Inspired Models of Network, 2008

Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
Classification in the presence of class noise using a probabilistic Kernel Fisher method.
Pattern Recognit., 2007

Protein Complex Prediction Using an Integrative Bioinformatics Approach.
J. Bioinform. Comput. Biol., 2007

Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation.
Genom. Proteom. Bioinform., 2007

SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets.
BMC Bioinform., 2007

A self-calibrating chrominance model applied to skin color detection.
Proceedings of the VISAPP 2007: Proceedings of the Second International Conference on Computer Vision Theory and Applications, Barcelona, Spain, March 8-11, 2007, 2007

Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Person-Independent 3D Sign Language Recognition.
Proceedings of the Gesture-Based Human-Computer Interaction and Simulation, 2007

Sign language detection using 3D visual cues.
Proceedings of the Fourth IEEE International Conference on Advanced Video and Signal Based Surveillance, 2007

2006
Random subspace method for multivariate feature selection.
Pattern Recognit. Lett., 2006

Artifacts of Markov blanket filtering based on discretized features in small sample size applications.
Pattern Recognit. Lett., 2006

Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens.
PLoS Comput. Biol., 2006

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.
BMC Bioinform., 2006

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets.
BMC Bioinform., 2006

Least absolute regression network analysis of the murine osteoblast differentiation network.
Bioinform., 2006

Maximum significance clustering of oligonucleotide microarrays.
Bioinform., 2006

Unifying user-based and item-based collaborative filtering approaches by similarity fusion.
Proceedings of the SIGIR 2006: Proceedings of the 29th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2006

Distributed collaborative filtering for peer-to-peer file sharing systems.
Proceedings of the 2006 ACM Symposium on Applied Computing (SAC), 2006

A User-Item Relevance Model for Log-Based Collaborative Filtering.
Proceedings of the Advances in Information Retrieval, 2006

Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2006

2005
Edge-Based Image Restoration.
IEEE Trans. Image Process., 2005

The Nearest Subclass Classifier: A Compromise between the Nearest Mean and Nearest Neighbor Classifier.
IEEE Trans. Pattern Anal. Mach. Intell., 2005

Constrained Texture Restoration.
EURASIP J. Adv. Signal Process., 2005

A protocol for building and evaluating predictors of disease state based on microarray data.
Bioinform., 2005

Self-organizing distributed collaborative filtering.
Proceedings of the SIGIR 2005: Proceedings of the 28th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2005

Isophote Properties as Features for Object Detection.
Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), 2005

Unravelling the murine osteoblast differentiation pathway by network structure analysis using time-series microarray data.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Which normalization method is best? A platform-independent biologically inspired quantitative comparison of normalization methods.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Maximum signi.cance clustering of oligonucleotide microarrays.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Multivariate gene selection: Does it help.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Predicting gene function by combining expression and interaction data.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Identifying Orthologs: Cycle Splitting on the Breakpoint Graph.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004
Local Fisher Embedding.
Proceedings of the 17th International Conference on Pattern Recognition, 2004

Video content representation on tiny devices.
Proceedings of the 2004 IEEE International Conference on Multimedia and Expo, 2004

Influence of The Observation Likelihood Function on Particle Filtering Performance in Tracking Applications.
Proceedings of the Sixth IEEE International Conference on Automatic Face and Gesture Recognition (FGR 2004), 2004

2003
A cellular coevolutionary algorithm for image segmentation.
IEEE Trans. Image Process., 2003

Studying the Conditions for Learning Dynamic Bayesian Networks to Discover Genetic Regulatory Networks.
Simul., 2003

Multi-criterion optimization for genetic network modeling.
Signal Process., 2003

Motion tracking as a constrained optimization problem.
Pattern Recognit., 2003

Establishing motion correspondence using extended temporal scope.
Artif. Intell., 2003

2002
A Maximum Variance Cluster Algorithm.
IEEE Trans. Pattern Anal. Mach. Intell., 2002

Scale-invariant segmentation of dynamic contrast-enhanced perfusion MR images with inherent scale selection.
Comput. Animat. Virtual Worlds, 2002

A spatiotemporal image sequence restoration algorithm.
Proceedings of the 2002 International Conference on Image Processing, 2002

Image sequence restoration in the presence of pathological motion and severe artifacts.
Proceedings of the IEEE International Conference on Acoustics, 2002

Restoration of films affected by partial color artefacts.
Proceedings of the 11th European Signal Processing Conference, 2002

2001
Resolving Motion Correspondence for Densely Moving Points.
IEEE Trans. Pattern Anal. Mach. Intell., 2001

Utility map reconstruction.
Int. J. Geogr. Inf. Sci., 2001

Determination of Binding Amino Acids Based on Random Peptide Array Screening Data.
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

A Comparison of Genetic Network Models.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Complex event classification in degraded image sequences.
Proceedings of the 2001 International Conference on Image Processing, 2001

Dating and Authentication of Rembrandt's Etchings with the Help of Computational Intelligence.
Proceedings of the International Cultural Heritage Informatics Meeting: Proceedings from ICHIM 2001. Politechnico di Milano, Milan, Italy, September 3-7, 2001, 2001

Facial Landmarks Localization Based on Fuzzy and Gabor Wavelet Graph Matching.
Proceedings of the 10th IEEE International Conference on Fuzzy Systems, 2001

2000
On-line detection of red blood cell shape using deformable templates.
Pattern Recognit. Lett., 2000

Image sharpening by morphological filtering.
Pattern Recognit., 2000

Competitive Segmentation: A Struggle for Image Space.
Proceedings of the Parallel Problem Solving from Nature, 2000

Linear Modeling of Genetic Networks from Experimental Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

Eye Activity Detection and Recognition Using Morphological Scale-Space Decomposition.
Proceedings of the 15th International Conference on Pattern Recognition, 2000

Detecting Generic Low-Level Features in Images.
Proceedings of the 15th International Conference on Pattern Recognition, 2000

Object Tracking by Adaptive Modeling.
Proceedings of the 2000 International Conference on Image Processing, 2000

1999
Information processing for intelligent molecular diagnosis.
Pattern Recognit. Lett., 1999

1998
A Fast and Robust Point Tracking Algorithm.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

1997
Information Fusion for Conflict Resolution in Map Interpretation.
Proceedings of the Graphics Recognition, 1997

1996
Locating Facial Features in Image Sequences using Neural Networks.
Proceedings of the 2nd International Conference on Automatic Face and Gesture Recognition (FG '96), 1996

1995
Facial feature localization and adaptation of a generic face model for model-based coding.
Signal Process. Image Commun., 1995

1992
Transformation of a general 3D facial model to an actual scene face.
Proceedings of the 11th IAPR International Conference on Pattern Recognition, 1992


  Loading...