Sergey Koren

According to our database, Sergey Koren authored at least 13 papers between 2008 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Weighted minimizer sampling improves long read mapping.

Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy

Bioinform., 2020

2019

Integrating Hi-C links with assembly graphs for chromosome-scale assembly.

Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren

PLoS Comput. Biol., 2019

HLA*LA - HLA typing from linearly projected graph alignments.

Alexander T. Dilthey, Alexander J. Mentzer, Raphael Carapito, Clare Cutland, Nezih Cereb, Shabir A Madhi, Arang Rhie, Sergey Koren, Seiamak Bahram, Gil McVean, Adam M. Phillippy

Bioinform., 2019

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.

Nathan D. Olson, Todd J. Treangen, Christopher Michael Hill, Victoria Cepeda-Espinoza, Jay Ghurye, Sergey Koren, Mihai Pop

Briefings Bioinform., 2019

2018

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.

Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy

J. Comput. Biol., 2018

A fast adaptive algorithm for computing whole-genome homology maps.

Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru

Bioinform., 2018

2014

Automated ensemble assembly and validation of microbial genomes.

Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy

BMC Bioinform., 2014

2013

De novo likelihood-based measures for comparing metagenomic assemblies.

Christopher Michael Hill, Irina Astrovskaya, Howard Huang, Sergey Koren, Atif Memon, Todd J. Treangen, Mihai Pop

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms.

Sergey Koren

PhD thesis, 2012

2011

Bambus 2: scaffolding metagenomes.

Sergey Koren, Todd J. Treangen, Mihai Pop

Bioinform., 2011

2010

An algorithm for automated closure during assembly.

Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton

BMC Bioinform., 2010

2009

A consistency-based consensus algorithm for <i>de novo</i> and reference-guided sequence assembly of short reads.

Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert

Bioinform., 2009

2008

Aggressive assembly of pyrosequencing reads with mates.

Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton

Bioinform., 2008