Srinivas Aluru
Orcid: 0000-0003-4279-469XAffiliations:
- Georgia Institute of Technology, Atlanta, GA, USA
- Iowa State University, Ames, Iowa, USA (1999 - 2013)
- New Mexico State University, Las Cruces, NM, USA (1996 - 1999)
- Syracuse University, NY, USA (1994 - 1996)
- Indian Institute of Technology, Madras, India (former)
According to our database1,
Srinivas Aluru
authored at least 199 papers
between 1992 and 2023.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2020, "For contributions to parallel methods in computational biology and leadership in data science".
IEEE Fellow
IEEE Fellow 2010, "For contributions to computational biology".
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
On csauthors.net:
Bibliography
2023
A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery.
IEEE Trans. Parallel Distributed Syst., June, 2023
IEEE Trans. Parallel Distributed Syst., June, 2023
Proceedings of the 30th IEEE International Conference on High Performance Computing, 2023
2022
GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory Networks.
J. Comput. Biol., 2022
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks.
Bioinform., 2022
Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022
Proceedings of the Research in Computational Molecular Biology, 2022
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Proceedings of the International Conference for High Performance Computing, 2021
Proceedings of the 2021 SIAM Conference on Applied and Computational Discrete Algorithms, 2021
2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings.
J. Parallel Distributed Comput., 2020
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction.
BMC Bioinform., 2020
Proceedings of the 8th International Conference on Learning Representations, 2020
2019
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
IEEE Trans. Computers, 2019
Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019
Distributed enhanced suffix arrays: efficient algorithms for construction and querying.
Proceedings of the International Conference for High Performance Computing, 2019
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019
ParRefCom: Parallel Reference-based Compression of Paired-end Genomics Read Datasets.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
J. Comput. Biol., 2018
BMC Bioinform., 2018
Optimizing high performance distributed memory parallel hash tables for DNA <i>k</i>-mer counting.
Proceedings of the International Conference for High Performance Computing, 2018
Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis.
Proceedings of the Research in Computational Molecular Biology, 2018
Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification.
Proceedings of the Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, 2018
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis.
Proceedings of the 27th International Conference on Parallel Architectures and Compilation Techniques, 2018
2017
IEEE Trans. Parallel Distributed Syst., 2017
Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications".
Parallel Comput., 2017
Parallelized Kendall's Tau Coefficient Computation via SIMD Vectorized Sorting On Many-Integrated-Core Processors.
CoRR, 2017
BMC Bioinform., 2017
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017
Parallel Exact Dynamic Bayesian Network Structure Learning with Application to Gene Networks.
Proceedings of the 24th IEEE International Conference on High Performance Computing, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
J. Comput. Biol., 2016
A Provably Efficient Algorithm for the <i>k</i>-Mismatch Average Common Substring Problem.
J. Comput. Biol., 2016
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.
BMC Syst. Biol., 2016
Proceedings of the 6th Workshop on Irregular Applications: Architecture and Algorithms, 2016
A parallel algorithm for finding all pairs <i>k</i>-mismatch maximal common substrings.
Proceedings of the International Conference for High Performance Computing, 2016
Proceedings of the 28th International Symposium on Computer Architecture and High Performance Computing, 2016
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium, 2016
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016
Proceedings of the 45th International Conference on Parallel Processing, 2016
Proceedings of the 23rd IEEE International Conference on High Performance Computing, 2016
Effective Utilization of Paired Reads to Improve Length and Accuracy of Contigs in Genome Assembly.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Sci. Program., 2015
J. Parallel Distributed Comput., 2015
Proceedings of the High Performance Computing - 30th International Conference, 2015
Proceedings of the International Conference for High Performance Computing, 2015
Proceedings of the International Conference for High Performance Computing, 2015
Proceedings of the Research in Computational Molecular Biology, 2015
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract).
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015
Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015
Proceedings of the 22nd IEEE International Conference on High Performance Computing Workshops, 2015
SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
CoRR, 2014
Proceedings of the International Conference for High Performance Computing, 2014
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014
Parallel Mutual Information Based Construction of Whole-Genome Networks on the Intel (R) Xeon Phi (TM) Coprocessor.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014
2013
J. Parallel Distributed Comput., 2013
J. Bioinform. Comput. Biol., 2013
Briefings Bioinform., 2013
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013
Large-scale metagenomic clustering via quasi clique enumeration and read assignment ambiguity resolution.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
2012
An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval.
Proceedings of the Theory and Applications of Models of Computation, 2012
Proceedings of the SC Conference on High Performance Computing Networking, 2012
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
2011
Proceedings of the Encyclopedia of Parallel Computing, 2011
IEEE Trans. Parallel Distributed Syst., 2011
Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011
Parallel Discovery of Direct Causal Relations and Markov Boundaries with Applications to Gene Networks.
Proceedings of the International Conference on Parallel Processing, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
2010
Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks.
IEEE Trans. Parallel Distributed Syst., 2010
J. Parallel Distributed Comput., 2010
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
Proceedings of the 39th International Conference on Parallel Processing, 2010
An Improved Model for Gene Cluster Inference.
Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010
Proceedings of the Scientific Computing with Multicore and Accelerators., 2010
2009
IEEE Trans. Parallel Distributed Syst., 2009
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009
Proceedings of the ICPP 2009, 2009
Proceedings of the 16th International Conference on High Performance Computing, 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
Proceedings of the Sixth Indian Conference on Computer Vision, Graphics & Image Processing, 2008
Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L.
Proceedings of the 2008 International Conference on Parallel Processing, 2008
Proceedings of the 2008 International Conference on Parallel Processing, 2008
Proceedings of the High Performance Computing, 2008
2007
Proceedings of the Handbook of Parallel Computing - Models, Algorithms and Applications., 2007
J. Parallel Distributed Comput., 2007
Proceedings of the String Processing and Information Retrieval, 2007
Proceedings of the ACM/IEEE Conference on High Performance Networking and Computing, 2007
Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007
PARALLEL-TCOFFEE: A parallel multiple sequence aligner.
Proceedings of the ISCA 20th International Conference on Parallel and Distributed Computing Systems, 2007
Massively parallel expressed sequence tag clustering.
Proceedings of the ISCA 20th International Conference on Parallel and Distributed Computing Systems, 2007
2006
IEEE Trans. Parallel Distributed Syst., 2006
J. Bioinform. Comput. Biol., 2006
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006
Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006
Communication-aware Parallel Domain Decomposition using Space Filling Curves.
Proceedings of the ISCA 19th International Conference on Parallel and Distributed Computing Systems, 2006
Proceedings of the Parallel Processing for Scientific Computing, 2006
Proceedings of the Handbook of Nature-Inspired and Innovative Computing, 2006
2005
IEEE/ACM Trans. Netw., 2005
Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods.
Parallel Comput., 2005
J. Discrete Algorithms, 2005
Inf. Process. Lett., 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005
Indexing for Subscription Covering in Publish-Subscribe Systems.
Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005
2004
Proceedings of the Handbook of Data Structures and Applications., 2004
Proceedings of the Handbook of Data Structures and Applications., 2004
IEEE Trans. Parallel Distributed Syst., 2004
A tunable collective communication framework on a cluster of SMPS.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2004
Proceedings of the Computer and Information Sciences, 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
2003
IEEE Trans. Parallel Distributed Syst., 2003
J. Parallel Distributed Comput., 2003
Guest Editor's Introduction: Special issue on high-performance computational biology.
J. Parallel Distributed Comput., 2003
Proceedings of the 12th International Conference on Computer Communications and Networks, 2003
Proceedings of the 7th European Control Conference, 2003
2002
IEEE Trans. Parallel Distributed Syst., 2002
A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Proceedings of the 31st International Conference on Parallel Processing (ICPP 2002), 2002
Proceedings of the 2002 IEEE International Conference on Cluster Computing (CLUSTER 2002), 2002
2000
IEEE Trans. Parallel Distributed Syst., 2000
Proceedings of the 14th International Parallel & Distributed Processing Symposium (IPDPS'00), 2000
1999
Proceedings of the ACM/IEEE Conference on Supercomputing, 1999
A Practical Parallel Algorithm for Line Segment Visibility.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999
Proceedings of the High Performance Computing, 1999
Proceedings of the Foundations of Software Technology and Theoretical Computer Science, 1999
1998
J. Supercomput., 1998
1997
IEEE Trans. Parallel Distributed Syst., 1997
J. Parallel Distributed Comput., 1997
Proceedings of the Fourth International on High-Performance Computing, 1997
1996
Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications.
Sci. Program., 1996
SIAM J. Sci. Comput., 1996
Proceedings of the Eighth IEEE Symposium on Parallel and Distributed Processing, 1996
Practical Paralle1 Algorithm for Constructing Line Arrangements.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1996
Proceedings of the 10th international conference on Supercomputing, 1996
1995
Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators.
Proceedings of the 1995 International Conference on Parallel Processing, 1995
1994
Proceedings of the Proceedings Supercomputing '94, 1994
1993
Subtle Issues of SIMD Tree Search.
Proceedings of the Parallel Computing: Trends and Applications, 1993
Proceedings of the 7th international conference on Supercomputing, 1993
1992