Simone Zaccaria

According to our database, Simone Zaccaria authored at least 15 papers between 2013 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data.

Zubair Lalani, Gillian Chu, Silas Hsu, Shaw Kagawa, Michael Xiang, Simone Zaccaria, Mohammed El-Kebir

PLoS Comput. Biol., October, 2022

Parsimonious Clone Tree Integration in cancer.

Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir

Algorithms Mol. Biol., 2022

2021

Parsimonious Clone Tree Reconciliation in Cancer.

Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir

Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

2020

Identifying tumor clones in sparse single-cell mutation data.

Matthew A. Myers, Simone Zaccaria, Benjamin J. Raphael

Bioinform., 2020

Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses.

Gryte Satas, Simone Zaccaria, Geoffrey Mon, Benjamin J. Raphael

Proceedings of the Research in Computational Molecular Biology, 2020

2018

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael

J. Comput. Biol., 2018

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.

Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni

BMC Bioinform., 2018

2017

Inferring Genomic Variants and their Evolution: Combinatorial Optimization for Haplotype Assembly and Quantification of Intra-Tumor Heterogeneity.

Simone Zaccaria

PhD thesis, 2017

Complexity and algorithms for copy-number evolution problems.

Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira

Algorithms Mol. Biol., 2017

The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data.

Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael

Proceedings of the Research in Computational Molecular Biology, 2017

2016

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.

Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria

J. Comput. Biol., 2016

HapCol: accurate and memory-efficient haplotype assembly from long reads.

Yuri Pirola, Simone Zaccaria, Riccardo Dondi, Gunnar W. Klau, Nadia Pisanti, Paola Bonizzoni

Bioinform., 2016

Copy-Number Evolution Problems: Complexity and Algorithms.

Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

2015

On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem.

Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria

Proceedings of the Combinatorial Pattern Matching - 26th Annual Symposium, 2015

2013

On the inversion-indel distance.

Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye

BMC Bioinform., 2013