Yuri Pirola

According to our database1, Yuri Pirola authored at least 34 papers between 2006 and 2019.

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Bibliography

2019
Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array.
Journal of Computational Biology, 2019

2018
Divide and Conquer Computation of the Multi-string BWT and LCP Array.
Proceedings of the Sailing Routes in the World of Computation, 2018

2017
FSG: Fast String Graph Construction for De Novo Assembly.
Journal of Computational Biology, 2017

Computing the BWT and LCP array of a Set of Strings in External Memory.
CoRR, 2017

An External-Memory Algorithm for String Graph Construction.
Algorithmica, 2017

2016
Beyond Evolutionary Trees.
Encyclopedia of Algorithms, 2016

LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.
Journal of Computational Biology, 2016

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.
Journal of Computational Biology, 2016

HapCol: accurate and memory-efficient haplotype assembly from long reads.
Bioinformatics, 2016

FSG: Fast String Graph Construction for De Novo Assembly of Reads Data.
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015
A Clustering Algorithm for Planning the Integration Process of a Large Number of Conceptual Schemas.
J. Comput. Sci. Technol., 2015

Covering Pairs in Directed Acyclic Graphs.
Comput. J., 2015

On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem.
Proceedings of the Combinatorial Pattern Matching - 26th Annual Symposium, 2015

2014
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs.
Journal of Computational Biology, 2014

Constructing String Graphs in External Memory.
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

2013
Parameterized complexity of k-anonymity: hardness and tractability.
J. Comb. Optim., 2013

Maximum Disjoint Paths on Edge-Colored Graphs: Approximability and Tractability.
Algorithms, 2013

Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
A study of the neutrality of Boolean function landscapes in genetic programming.
Theor. Comput. Sci., 2012

A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
BMC Bioinformatics, 2012

2011
Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via SAT solvers
CoRR, 2011

PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Pure Parsimony Xor Haplotyping.
IEEE/ACM Trans. Comput. Biology Bioinform., 2010

Beyond evolutionary trees.
Natural Computing, 2010

Variants of constrained longest common subsequence.
Inf. Process. Lett., 2010

Haplotype Inference on Pedigrees with Recombinations and Mutations.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Parameterized Complexity of k-Anonymity: Hardness and Tractability.
Proceedings of the Combinatorial Algorithms - 21st International Workshop, 2010

2009
Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach.
Journal of Computational Biology, 2009

Parameterized Complexity of the k-anonymity Problem
CoRR, 2009

Minimum Factorization Agreement of Spliced ESTs.
Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

2007
A Comprehensive View of Fitness Landscapes with Neutrality and Fitness Clouds.
Proceedings of the Genetic Programming, 10th European Conference, 2007

2006
A quantitative study of neutrality in GP boolean landscapes.
Proceedings of the Genetic and Evolutionary Computation Conference, 2006


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