Sushmita Roy

According to our database, Sushmita Roy authored at least 17 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.

Brittany Baur, Junha Shin, Jacob Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath, Jun S. Song, William Stafford Noble, Sushmita Roy

PLoS Comput. Biol., 2023

ISMB/ECCB 2023 proceedings.

Yann Ponty, Sushmita Roy

Bioinform., 2023

2022

Comparison of deep and shallow graph representation learning algorithms for detecting modules in molecular networks.

Zhiwei Song, Brittany A. Baur, Sushmita Roy

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2016

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens.

Deborah Chasman, Kevin B. Walters, Tiago J. S. Lopes, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy

PLoS Comput. Biol., 2016

Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions.

Zhen Niu, Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy

Bioinform., 2016

2014

High-order interactions observed in multi-task intrinsic networks are dominant indicators of aberrant brain function in schizophrenia.

Sergey M. Plis, Jing Sui, Terran Lane, Sushmita Roy, Vincent P. Clark, Vamsi K. Potluru, René J. Huster, Andrew Michael, Scott R. Sponheim, Michael P. Weisend, Vince D. Calhoun

NeuroImage, 2014

2013

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks.

Sushmita Roy, Stephen Lagree, Zhonggang Hou, James A. Thomson, Ron M. Stewart, Audrey P. Gasch

PLoS Comput. Biol., 2013

2011

A multiple network learning approach to capture system-wide condition-specific responses.

Sushmita Roy, Margaret Werner-Washburne, Terran Lane

Bioinform., 2011

2010

Information-Theoretic Inference of Gene Networks Using Backward Elimination.

Patrick Meyer, Daniel Marbach, Sushmita Roy, Manolis Kellis

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009

Inference of Functional Networks of Condition-Specific Response--A Case Study Of Quiescence In Yeast.

Sushmita Roy, Terran Lane, Margaret Werner-Washburne, Diego Martínez

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Learning structurally consistent undirected probabilistic graphical models.

Sushmita Roy, Terran Lane, Margaret Werner-Washburne

Proceedings of the 26th Annual International Conference on Machine Learning, 2009

2008

A system for generating transcription regulatory networks with combinatorial control of transcription.

Sushmita Roy, Margaret Werner-Washburne, Terran Lane

Bioinform., 2008

2007

Integrative Construction and Analysis of Condition-specific Biological Networks.

Sushmita Roy, Terran Lane, Margaret Werner-Washburne

Proceedings of the Twenty-Second AAAI Conference on Artificial Intelligence, 2007

2006

A Hidden-State Markov Model for Cell Population Deconvolution.

Sushmita Roy, Terran Lane, Christopher P. Allen, Anthony D. Aragon, Margaret Werner-Washburne

J. Comput. Biol., 2006

Multivariate curve resolution of time course microarray data.

Peter D. Wentzell, Tobias K. Karakach, Sushmita Roy, M. Juanita Martinez, Christopher P. Allen, Margaret Werner-Washburne

BMC Bioinform., 2006

2005

A datamining approach to cell population deconvolution from gene expressions using particle filters.

Sushmita Roy, Terran Lane, Margaret Werner-Washburne

Proceedings of the 5th international workshop on Bioinformatics, 2005

2004

Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.

Markus Anderle II, Sushmita Roy, Hua Lin, Christopher Becker, Keith Joho

Bioinform., 2004