Manolis Kellis

According to our database1, Manolis Kellis authored at least 36 papers between 2004 and 2019.

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Bibliography

2019
Network Infusion to Infer Information Sources in Networks.
IEEE Trans. Network Science and Engineering, 2019

GENCODE reference annotation for the human and mouse genomes.
Nucleic Acids Research, 2019

Causal Mediation Analysis Leveraging Multiple Types of Summary Statistics Data.
CoRR, 2019

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation.
Bioinformatics, 2019

2018
Genie: A Secure, Transparent Sharing and Services Platform for Genetic and Health Data.
CoRR, 2018

A latent topic model for mining heterogenous non-randomly missing electronic health records data.
CoRR, 2018

RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.
Bioinformatics, 2018

2017
Network Maximal Correlation.
IEEE Trans. Network Science and Engineering, 2017

2016
HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease.
Nucleic Acids Research, 2016

Spectral Alignment of Networks.
CoRR, 2016

SwiSpot: modeling riboswitches by spotting out switching sequences.
Bioinformatics, 2016

2015
Integrative analysis of 111 reference human epigenomes Open.
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Nature, 2015

Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue.
Journal of Computational Biology, 2015

A Perspective on Future Research Directions in Information Theory.
CoRR, 2015

Improved gene tree error correction in the presence of horizontal gene transfer.
Bioinformatics, 2015

2014
Comparative analysis of metazoan chromatin organization Open.
Nature, 2014

Comparative analysis of regulatory information and circuits across distant species Open.
Nature, 2014

RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue.
Journal of Computational Biology, 2014

Diversifying Sparsity Using Variational Determinantal Point Processes.
CoRR, 2014

Pareto-optimal phylogenetic tree reconciliation.
Bioinformatics, 2014

2013
RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State.
PLoS Computational Biology, 2013

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue.
Journal of Computational Biology, 2013

Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss.
Journal of Computational Biology, 2013

Session Introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012
HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.
Nucleic Acids Research, 2012

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue.
Journal of Computational Biology, 2012

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
Bioinformatics, 2012

2011
Preface.
Journal of Computational Biology, 2011

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings.
Journal of Computational Biology, 2011

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
Bioinformatics [ISMB/ECCB], 2011

Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome.
Proceedings of the Research in Computational Molecular Biology, 2011

2010
Motif discovery in physiological datasets: A methodology for inferring predictive elements.
TKDD, 2010

Information-Theoretic Inference of Gene Networks Using Backward Elimination.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2008
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes.
PLoS Computational Biology, 2008

2007
Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking.
Proceedings of the Research in Computational Molecular Biology, 2007

2004
Methods in Comparative Genomics: Genome Correspondence, Gene Identification and Regulatory Motif Discovery.
Journal of Computational Biology, 2004


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