Takehiro Shimoda

According to our database, Takehiro Shimoda authored at least 6 papers between 2013 and 2015.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2015

Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures.

Takehiro Shimoda, Shuji Suzuki, Masahito Ohue, Takashi Ishida, Yutaka Akiyama

BMC Syst. Biol., 2015

2014

MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.

Masahito Ohue, Takehiro Shimoda, Shuji Suzuki, Yuri Matsuzaki, Takashi Ishida, Yutaka Akiyama

Bioinform., 2014

2013

MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.

Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Takehiro Shimoda, Toshiyuki Sato, Takashi Ishida, Yutaka Akiyama

Source Code Biol. Medicine, 2013

The MEGADOCK project: Ultra-high-speed protein-protein interaction prediction tools on supercomputing environments.

Takehiro Shimoda, Masahito Ohue, Yuri Matsuzaki, Takayuki Fujiwara, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama

Proceedings of the ACM Conference on Bioinformatics, 2013

MEGADOCK-GPU: Acceleration of Protein-Protein Docking Calculation on GPUs.

Takehiro Shimoda, Takashi Ishida, Shuji Suzuki, Masahito Ohue, Yutaka Akiyama

Proceedings of the ACM Conference on Bioinformatics, 2013

Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking.

Masahito Ohue, Yuri Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama

Proceedings of the ACM Conference on Bioinformatics, 2013