Takashi Ishida
Orcid: 0000-0002-9478-3223Affiliations:
- Tokyo Institute of Technology, Japan
According to our database1,
Takashi Ishida authored at least 29 papers
between 2007 and 2026.
Collaborative distances:
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Timeline
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Bibliography
2026
The consolidation of open-source computer-assisted chemical synthesis data into a comprehensive database.
J. Cheminformatics, December, 2026
Enhancing Interpretability of Survival Models With High Predictive Performance: Integrating Cox Proportional Hazards With Machine Learning Methods.
IEEE Access, 2026
2023
Comparing Supervised Learning and Rigorous Approach for Predicting Protein Stability upon Point Mutations in Difficult Targets.
J. Chem. Inf. Model., November, 2023
Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs.
Frontiers Bioinform., May, 2023
2021
Single-Step Retrosynthesis Prediction Based on the Identification of Potential Disconnection Sites Using Molecular Substructure Fingerprints.
J. Chem. Inf. Model., 2021
End-to-end learning for compound activity prediction based on binding pocket information.
BMC Bioinform., 2021
2020
Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer.
Supercomput. Front. Innov., 2020
Sequence alignment using machine learning for accurate template-based protein structure prediction.
Bioinform., 2020
2019
End-to-End Learning Based Compound Activity Prediction Using Binding Pocket Information.
Proceedings of the Intelligent Computing Theories and Application, 2019
2018
Stacking Multiple Molecular Fingerprints for Improving Ligand-Based Virtual Screening.
Proceedings of the Intelligent Computing Theories and Application, 2018
Improvement of template-based protein structure prediction by using chimera alignment.
Proceedings of the 8th International Conference on Bioscience, 2018
2017
Bioinform., 2017
2015
Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures.
BMC Syst. Biol., 2015
2014
Extreme Big Data (EBD): Next Generation Big Data Infrastructure Technologies Towards Yottabyte/Year.
Supercomput. Front. Innov., 2014
MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.
Bioinform., 2014
Proceedings of the Intelligent Computing in Bioinformatics - 10th International Conference, 2014
2013
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.
Source Code Biol. Medicine, 2013
Nucleic Acids Res., 2013
BMC Bioinform., 2013
The MEGADOCK project: Ultra-high-speed protein-protein interaction prediction tools on supercomputing environments.
Proceedings of the ACM Conference on Bioinformatics, 2013
Proceedings of the ACM Conference on Bioinformatics, 2013
Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
An Ultra-Fast Computing Pipeline for Metagenome Analysis with Next-Generation DNA Sequencers.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012
Improvement of the Protein-Protein Docking Prediction by Introducing a Simple Hydrophobic Interaction Model: An Application to Interaction Pathway Analysis.
Proceedings of the Pattern Recognition in Bioinformatics, 2012
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2012
2009
PiSite: a database of protein interaction sites using multiple binding states in the PDB.
Nucleic Acids Res., 2009
2008
Bioinform., 2008
2007
Nucleic Acids Res., 2007