Tsu-Pei Chiu

According to our database, Tsu-Pei Chiu authored at least 5 papers between 2015 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2025

DNAdesign: feature-aware <i>in silico</i> design of synthetic DNA through mutation.

Yingfei Wang, Jinsen Li, Tsu-Pei Chiu, Nicolas Gompel, Remo Rohs

Bioinform., 2025

2022

Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics.

Brendon H. Cooper, Tsu-Pei Chiu, Remo Rohs

Bioinform., November, 2022

2020

TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.

Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, Yingfei Wang, Remo Rohs

Nucleic Acids Res., 2020

2016

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.

Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Lin Yang, Renato Paro, Remo Rohs

Bioinform., 2016

2015

GBshape: a genome browser database for DNA shape annotations.

Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J. Main, Stephen C. J. Parker, Sergey V. Nuzhdin, Thomas D. Tullius, Remo Rohs

Nucleic Acids Res., 2015