Remo Rohs

According to our database, Remo Rohs authored at least 11 papers between 2006 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics.

Brendon H. Cooper, Tsu-Pei Chiu, Remo Rohs

Bioinform., November, 2022

2020

DNAproDB: an expanded database and web-based tool for structural analysis of DNA?protein complexes.

Jared M. Sagendorf, Nicholas Markarian, Helen M. Berman, Remo Rohs

Nucleic Acids Res., 2020

TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.

Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, Yingfei Wang, Remo Rohs

Nucleic Acids Res., 2020

2018

Deep Graph Embedding for Ranking Optimization in E-commerce.

Chen Chu, Zhao Li, Beibei Xin, Fengchao Peng, Chuanren Liu, Remo Rohs, Qiong Luo, Jingren Zhou

Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

2017

DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.

Jared M. Sagendorf, Helen M. Berman, Remo Rohs

Nucleic Acids Res., 2017

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Wenxiu Ma, Lin Yang, Remo Rohs, William Stafford Noble

Bioinform., 2017

2016

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.

Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Lin Yang, Renato Paro, Remo Rohs

Bioinform., 2016

2015

GBshape: a genome browser database for DNA shape annotations.

Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J. Main, Stephen C. J. Parker, Sergey V. Nuzhdin, Thomas D. Tullius, Remo Rohs

Nucleic Acids Res., 2015

2014

NAR Breakthrough Article: TFBSshape: a motif database for DNA shape features of transcription factor binding sites.

Lin Yang, Tianyin Zhou, Iris Dror, Anthony Mathelier, Wyeth W. Wasserman, Raluca Gordân, Remo Rohs

Nucleic Acids Res., 2014

2013

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

Tianyin Zhou, Lin Yang, Yan Lu, Iris Dror, Ana Carolina Dantas Machado, Tahereh Ghane, Rosa Di Felice, Remo Rohs

Nucleic Acids Res., 2013

2006

Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm and associated Jacobians.

Heinz Sklenar, Daniel Wüstner, Remo Rohs

J. Comput. Chem., 2006