Vikram Shivakumar

According to our database, Vikram Shivakumar authored at least 9 papers between 2019 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification.

Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead

J. Comput. Biol., 2026

2025

vikshiv/mumemto.

Vikram Shivakumar

Dataset, August, 2025

Fast and flexible minimizer digestion with <tt>digest</tt>.

Alan Zheng, Ishmeal Lee, Vikram Shivakumar, Omar Y. Ahmed, Ben Langmead

Bioinform., 2025

Partitioned Multi-MUM Finding for Scalable Pangenomics (Extended Abstract).

Vikram Shivakumar, Ben Langmead

Proceedings of the 25th International Conference on Algorithms for Bioinformatics, 2025

Prefix-Free Parsing for Merging Big BWTs.

Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Lipták, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar

Proceedings of the String Processing and Information Retrieval, 2025

Improved Pangenomic Classification Accuracy with Chain Statistics.

Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead

Proceedings of the Research in Computational Molecular Biology, 2025

2024

Sigmoni: classification of nanopore signal with a compressed pangenome index.

Vikram Shivakumar, Omar Y. Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead

Bioinform., 2024

2022

riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.

Alexander Cope, Felicity Anderson, John Favate, Michael Jackson, Amanda Mok, Anna Kurowska, Junchen Liu, Emma Mackenzie, Vikram Shivakumar, Peter Tilton, Sophie M. Winterbourne, Siyin Xue, Kostas Kavoussanakis, Liana F. Lareau, Premal Shah, Edward W. J. Wallace

Bioinform., 2022

2019

SNP2SIM: a modular workflow for standardizing molecular simulation and functional analysis of protein variants.

Matthew McCoy, Vikram Shivakumar, Sridhar Nimmagadda, Mohsin Saleet Jafri, Subha Madhavan

BMC Bioinform., 2019