Nathaniel K. Brown

According to our database, Nathaniel K. Brown authored at least 14 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Optimal-Time Move Structure Balancing and LCP Array Computation from the RLBWT.

Nathaniel K. Brown, Ahsan Sanaullah, Shaojie Zhang, Ben Langmead

CoRR, March, 2026

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification.

Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead

J. Comput. Biol., 2026

Bounding the Average Move Structure Query for Faster and Smaller RLBWT Permutations.

Nathaniel K. Brown, Ben Langmead

Proceedings of the 24th International Symposium on Experimental Algorithms, 2026

2025

KeBaB: <i>k</i>-mer based breaking for finding super-maximal exact matches.

Nathaniel K. Brown, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie

CoRR, February, 2025

KeBaB: k-mer Based Breaking for Finding Long MEMs.

Nathaniel K. Brown, Lore Depuydt, Mohsen Zakeri, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie, Ben Langmead

Proceedings of the String Processing and Information Retrieval, 2025

Improved Pangenomic Classification Accuracy with Chain Statistics.

Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead

Proceedings of the Research in Computational Molecular Biology, 2025

Faster Run-Length Compressed Suffix Arrays.

Nathaniel K. Brown, Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Marinella Sciortino

Proceedings of the From Strings to Graphs, 2025

2024

StephenHwang/MEMO_experiments.

Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

Dataset, November, 2024

StephenHwang/MEMO.

Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

Dataset, November, 2024

MIOV: Reordering MOVI for even better locality.

Peter Peresíni, Nathaniel K. Brown, Travis Gagie, Ben Langmead

CoRR, 2024

MEM-Based Pangenome Indexing for k-mer Queries.

Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

Proceedings of the 24th International Workshop on Algorithms in Bioinformatics, 2024

Faster Maximal Exact Matches with Lazy LCP Evaluation.

Adrián Goga, Lore Depuydt, Nathaniel K. Brown, Jan Fostier, Travis Gagie, Gonzalo Navarro

Proceedings of the Data Compression Conference, 2024

2023

Augmented Thresholds for MONI.

César Martínez-Guardiola, Nathaniel K. Brown, Fernando Silva-Coira, Dominik Köppl, Travis Gagie, Susana Ladra

Proceedings of the Data Compression Conference, 2023

2022

RLBWT Tricks.

Nathaniel K. Brown, Travis Gagie, Massimiliano Rossi

Proceedings of the 20th International Symposium on Experimental Algorithms, 2022