Vladimir Reinharz

According to our database, Vladimir Reinharz authored at least 15 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.

Gabriel Loyer, Vladimir Reinharz

Bioinform., February, 2024

2023

Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics.

Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari

PLoS Comput. Biol., 2023

Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique.

Théo Boury, Yann Ponty, Vladimir Reinharz

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2021

Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.

Antoine Soulé, Vladimir Reinharz, Roman Sarrazin-Gendron, Alain Denise, Jérôme Waldispühl

PLoS Comput. Biol., 2021

A Graph-Based Similarity Approach to Classify Recurrent Complex Motifs from Their Context in RNA Structures.

Coline Gianfrotta, Vladimir Reinharz, Dominique Barth, Alain Denise

Proceedings of the 19th International Symposium on Experimental Algorithms, 2021

2020

incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.

Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash

Bioinform., 2020

Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification.

Roman Sarrazin-Gendron, Hua-Ting Yao, Vladimir Reinharz, Carlos G. Oliver, Yann Ponty, Jérôme Waldispühl

Proceedings of the Research in Computational Molecular Biology, 2020

2018

Design of RNAs: comparing programs for inverse RNA folding.

Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash

Briefings Bioinform., 2018

2017

RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.

Jason Yao, Vladimir Reinharz, François Major, Jérôme Waldispühl

Nucleic Acids Res., 2017

A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics.

Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash

Frontiers Appl. Math. Stat., 2017

2016

incaRNAfbinv: a web server for the fragment-based design of RNA sequences.

Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash

Nucleic Acids Res., 2016

2013

Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs.

Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl

J. Comput. Biol., 2013

A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.

Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl

Bioinform., 2013

A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs.

Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl

Proceedings of the Research in Computational Molecular Biology, 2013

2012

Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.

Vladimir Reinharz, François Major, Jérôme Waldispühl

Bioinform., 2012