Jérôme Waldispühl
Orcid: 0000-0002-2561-7117
According to our database1,
Jérôme Waldispühl
authored at least 52 papers
between 2002 and 2024.
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Bibliography
2024
Bioinform., February, 2024
2023
Proceedings of The ACM Collective Intelligence Conference, 2023
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, 2023
Localized, Non-parametric Detection of RNA Structural Modification using Nanopore Basecalling.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
Adaptive Instructional System for Complex Equipment Trainings in the Post-covid Era: Breaking the Ice of Time-Consuming Tasks.
Proceedings of the Adaptive Instructional Systems, 2022
2021
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.
PLoS Comput. Biol., 2021
2020
J. Chem. Inf. Model., 2020
A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces cerevisiae.
J. Comput. Biol., 2020
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.
Bioinform., 2020
Fast and flexible coarse-grained prediction of protein folding routes using ensemble modeling and evolutionary sequence variation.
Bioinform., 2020
Appl. Netw. Sci., 2020
Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification.
Proceedings of the Research in Computational Molecular Biology, 2020
2019
J. Chem. Inf. Model., 2019
CoRR, 2019
2018
Ten simple rules to create a serious game, illustrated with examples from structural biology.
PLoS Comput. Biol., 2018
Briefings Bioinform., 2018
A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces Cerevisae.
Proceedings of the Research in Computational Molecular Biology, 2018
2017
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res., 2017
J. Comput. Biol., 2017
10 simple rules to create a serious game, illustrated with examples from structural biology.
CoRR, 2017
Proceedings of the Fifth AAAI Conference on Human Computation and Crowdsourcing, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Nucleic Acids Res., 2016
Investigating Mutations to Reduce Huntingtin Aggregation by Increasing Htt-N-Terminal Stability and Weakening Interactions with PolyQ Domain.
Comput. Math. Methods Medicine, 2016
Collaborative Solving in a Human Computing Game Using a Market, Skills and Challenges.
Proceedings of the 2016 Annual Symposium on Computer-Human Interaction in Play, 2016
2015
Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes.
Bioinform., 2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
2014
Exploration of the Dynamic Properties of Protein Complexes Predicted from Spatially Constrained Protein-Protein Interaction Networks.
PLoS Comput. Biol., 2014
Proceedings of the Seconf AAAI Conference on Human Computation and Crowdsourcing, 2014
2013
Nucleic Acids Res., 2013
Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs.
J. Comput. Biol., 2013
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Bioinform., 2013
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs.
Proceedings of the Research in Computational Molecular Biology, 2013
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
Bioinform., 2012
2011
corRna: a web server for predicting multiple-point deleterious mutations in structural RNAs.
Nucleic Acids Res., 2011
An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes Under Evolutionary Pressure.
J. Comput. Biol., 2011
J. Comput. Biol., 2011
2009
RNAmutants: a web server to explore the mutational landscape of RNA secondary structures.
Nucleic Acids Res., 2009
2008
PLoS Comput. Biol., 2008
2007
Computing the Partition Function and Sampling for Saturated Secondary Structures of RNA, with Respect to the Turner Energy Model.
J. Comput. Biol., 2007
2006
transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
Nucleic Acids Res., 2006
2005
Modeling and predicting all-alpha transmembrane proteins including helix-helix pairing.
Theor. Comput. Sci., 2005
2002
An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002