Xiaowo Wang

According to our database, Xiaowo Wang authored at least 22 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Building digital life systems for future biology and medicine.

Xuegong Zhang, Lei Wei, Rui Jiang, Xiaowo Wang, Jin Gu, Zhen Xie, Hairong Lv

Quant. Biol., September, 2023

2022

Correction to: DeSP: a systematic DNA storage error simulation pipeline.

Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang

BMC Bioinform., 2022

DeSP: a systematic DNA storage error simulation pipeline.

Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang

BMC Bioinform., 2022

ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.

Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang

Briefings Bioinform., 2022

Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.

Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang

Briefings Bioinform., 2022

2021

cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.

Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang

Bioinform., November, 2021

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions.

Shengquan Chen, Qiao Liu, Xuejian Cui, Zhan-Ying Feng, Chunquan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang

Nucleic Acids Res., 2021

Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction.

Tao Hu, Lei Wei, Shuailin Li, Tianrun Cheng, Xuegong Zhang, Xiaowo Wang

Genom. Proteom. Bioinform., 2021

CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.

Tao Hu, Shixiong Xu, Lei Wei, Xuegong Zhang, Xiaowo Wang

Bioinform., 2021

DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.

Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang

Briefings Bioinform., 2021

2019

Regulation by competition: a hidden layer of gene regulatory network.

Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang

Quant. Biol., 2019

2018

esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.

Zheng Wei, Wei Zhang, Huan Fang, Yanda Li, Xiaowo Wang

Bioinform., 2018

DEsingle for detecting three types of differential expression in single-cell RNA-seq data.

Zhun Miao, Ke Deng, Xiaowo Wang, Xuegong Zhang

Bioinform., 2018

2017

Regulation by competing: A hidden layer of gene regulatory networks.

Xiaowo Wang

Proceedings of the 13th IEEE Conference on Automation Science and Engineering, 2017

2016

A quantitative understanding of microRNA-mediated competing endogenous RNA regulation.

Ye Yuan, Xinying Ren, Zhen Xie, Xiaowo Wang

Quant. Biol., 2016

Advances in computational ChIA-PET data analysis.

Chao He, Guipeng Li, Mohamed Nadhir Djekidel, Yang Chen, Xiaowo Wang, Michael Q. Zhang

Quant. Biol., 2016

2015

CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation.

Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang, Lei S. Qi

Bioinform., 2015

MICC: an R package for identifying chromatin interactions from ChIA-PET data.

Chao He, Michael Q. Zhang, Xiaowo Wang

Bioinform., 2015

2014

OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites.

Honglei Liu, Yanda Li, Xiaowo Wang

Quant. Biol., 2014

2010

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.

Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang

Bioinform., 2010

2008

Identification of phylogenetically conserved microRNA <i>cis</i>-regulatory elements across 12 <i>Drosophila</i> species.

Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li

Bioinform., 2008

2005

MicroRNA identification based on sequence and structure alignment.

Xiaowo Wang, Jing Zhang, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li

Bioinform., 2005