Xingyi Li

According to our database, Xingyi Li authored at least 16 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

PathActMarker: an R package for inferring pathway activity of complex diseases.

Xingyi Li, Jun Hao, Zhelin Zhao, Junming Li, Xingyu Liao, Min Li, Xuequn Shang

Frontiers Comput. Sci., March, 2025

Deep graph convolutional network-based multi-omics integration for cancer driver gene identification.

Yingzhuo Wu, Jialuo Xu, Junming Li, Jia Gu, Xuequn Shang, Xingyi Li

Briefings Bioinform., 2025

2024

Scbean: a python library for single-cell multi-omics data analysis.

Haohui Zhang, Yuwei Wang, Bin Lian, Yiran Wang, Xingyi Li, Tao Wang, Xuequn Shang, Hui Yang, Ahmad Aziz, Jialu Hu

Bioinform., February, 2024

Multiplex Networks and Pan-Cancer Multiomics-Based Driver Gene Identification Using Graph Neural Networks.

Xingyi Li, Junming Li, Jun Hao, Xingyu Liao, Min Li, Xuequn Shang

Big Data Min. Anal., 2024

Towards simplified graph neural networks for identifying cancer driver genes in heterophilic networks.

Xingyi Li, Jialuo Xu, Junming Li, Jia Gu, Xuequn Shang

Briefings Bioinform., 2024

2023

A personalized pathway activation inference method based on pathway structure for classification of inflammatory bowel disease.

Xingyi Li, Xuequn Shang, Zhelin Zhao, Chenzhuo Yan

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous Complex Disease Analysis.

Xingyi Li, Ju Xiang, Fang-Xiang Wu, Min Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data.

Xingyi Li, Min Li, Ju Xiang, Zhelin Zhao, Xuequn Shang

Bioinform., 2022

A multi-source fusion method to identify biomarkers for breast cancer prognosis based on dual-layer heterogeneous network.

Xingyi Li, Zhelin Zhao, Ju Xiang, Jialu Hu, Xuequn Shang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers.

Xingyi Li, Ju Xiang, Jianxin Wang, Jinyan Li, Fang-Xiang Wu, Min Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction.

Ju Xiang, Jiashuai Zhang, Ruiqing Zheng, Xingyi Li, Min Li

Briefings Bioinform., 2021

2020

Network-based methods for predicting essential genes or proteins: a survey.

Xingyi Li, Wenkai Li, Min Zeng, Ruiqing Zheng, Min Li

Briefings Bioinform., 2020

A topological AUC-based biomarker ensemble method for the complex disease analysis.

Xingyi Li, Ju Xiang, Fang-Xiang Wu, Min Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

Identification of Prognostic and Heterogeneous Breast Cancer Biomarkers Based on Fusion Network and Multiple Scoring Strategies.

Xingyi Li, Ju Xiang, Jianxin Wang, Fang-Xiang Wu, Min Li

Proceedings of the Intelligent Computing Theories and Application, 2019

DualRank: multiplex network-based dual ranking for heterogeneous complex disease analysis.

Xingyi Li, Ju Xiang, Xinyu Hu, Fang-Xiang Wu, Min Li

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Classification of Schizophrenia by Iterative Random Forest Feature Selection Based on DNA Methylation Array Data.

Xinyu Hu, Min Li, Linconghua Wang, Xingyi Li, Fang-Xiang Wu, Jianxin Wang

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019