Min Li
Orcid: 0000-0002-0188-1394Affiliations:
- Central South University, School of Information Science and Engineering, Changsha, China
According to our database1,
Min Li
authored at least 211 papers
between 2008 and 2023.
Collaborative distances:
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Bibliography
2023
Fusion-Based Deep Learning Architecture for Detecting Drug-Target Binding Affinity Using Target and Drug Sequence and Structure.
IEEE J. Biomed. Health Informatics, December, 2023
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism.
Bioinform., December, 2023
IEEE Trans. Comput. Soc. Syst., October, 2023
CACO: A Core-Attachment Method With Cross-Species Functional Ortholog Information to Detect Human Protein Complexes.
IEEE J. Biomed. Health Informatics, September, 2023
StackCPA: A stacking model for compound-protein binding affinity prediction based on pocket multi-scale features.
Comput. Biol. Medicine, September, 2023
Briefings Bioinform., September, 2023
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization.
Bioinform., August, 2023
DKADE: a novel framework based on deep learning and knowledge graph for identifying adverse drug events and related medications.
Briefings Bioinform., July, 2023
ViPal: A framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences.
J. Biomed. Informatics, June, 2023
Big Data Min. Anal., June, 2023
A comprehensive assessment and comparison of tools for HLA class I peptide-binding prediction.
Briefings Bioinform., May, 2023
Briefings Bioinform., May, 2023
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity.
Bioinform., March, 2023
DeepCellEss: cell line-specific essential protein prediction with attention-based interpretable deep learning.
Bioinform., January, 2023
Briefings Bioinform., January, 2023
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation.
Briefings Bioinform., January, 2023
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data.
Briefings Bioinform., January, 2023
A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence of GO Terms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
J. Chem. Inf. Model., 2023
J. Biomed. Informatics, 2023
DTIAM: A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.
CoRR, 2023
A flexible gene regulatory network reconstruction method based on autoencoder and graph attention network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
Temporal-Spatial Analysis of the Essentiality of Hub Proteins in Protein-Protein Interaction Networks.
IEEE Trans. Netw. Sci. Eng., 2022
IEEE J. Biomed. Health Informatics, 2022
IEEE J. Biomed. Health Informatics, 2022
DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous Complex Disease Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
NIMCE: A Gene Regulatory Network Inference Approach Based on Multi Time Delays Causal Entropy.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
In Silico Prediction of New Mutations That Can Improve the Binding Abilities Between 2019-nCoV Coronavirus and Human ACE2.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
EPIXplorer: A web server for prediction, analysis and visualization of enhancer-promoter interactions.
Nucleic Acids Res., 2022
Neurocomputing, 2022
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning.
CoRR, 2022
BACPI: a bi-directional attention neural network for compound-protein interaction and binding affinity prediction.
Bioinform., 2022
DeepDISOBind: accurate prediction of RNA-, DNA- and protein-binding intrinsically disordered residues with deep multi-task learning.
Briefings Bioinform., 2022
DeepLncLoc: a deep learning framework for long non-coding RNA subcellular localization prediction based on subsequence embedding.
Briefings Bioinform., 2022
A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods.
Briefings Bioinform., 2022
GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets.
Briefings Bioinform., 2022
Biomedical data, computational methods and tools for evaluating disease-disease associations.
Briefings Bioinform., 2022
HyMM: hybrid method for disease-gene prediction by integrating multiscale module structure.
Briefings Bioinform., 2022
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022
A single cell potency inference method based on the local cell-specific network entropy.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
MERAS: A method for entity recognition, alignment, and structuration from Chinese Electronic Medical Records.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
LDAGSO: Predicting 1ncRNA-Disease Associations from Graph Sequences and Disease Ontology via Deep Learning techniques.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
IEEE J. Biomed. Health Informatics, 2021
An Ensemble Method to Reconstruct Gene Regulatory Networks Based on Multivariate Adaptive Regression Splines.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Deletion Detection Method Using the Distribution of Insert Size and a Precise Alignment Strategy.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
A Deep Learning Framework for Identifying Essential Proteins by Integrating Multiple Types of Biological Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Neurocomputing, 2021
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement.
Genom. Proteom. Bioinform., 2021
CoRR, 2021
Improving circRNA-disease association prediction by sequence and ontology representations with convolutional and recurrent neural networks.
Bioinform., 2021
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction.
Briefings Bioinform., 2021
Briefings Bioinform., 2021
Biomedical data and computational models for drug repositioning: a comprehensive review.
Briefings Bioinform., 2021
Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species.
Briefings Bioinform., 2021
Overlapping Protein Complexes Detection Based on Multi-level Topological Similarities.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Improving human essential protein prediction using only protein sequences via ensemble learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
IEEE J. Biomed. Health Informatics, 2020
IEEE J. Biomed. Health Informatics, 2020
MEC: Misassembly Error Correction in Contigs based on Distribution of Paired-End Reads and Statistics of GC-contents.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
An Efficient Trimming Algorithm based on Multi-Feature Fusion Scoring Model for NGS Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Identification of Protein Complexes by Using a Spatial and Temporal Active Protein Interaction Network.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
United Neighborhood Closeness Centrality and Orthology for Predicting Essential Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
BMC Bioinform., 2020
BMC Bioinform., 2020
Protein-protein interaction site prediction through combining local and global features with deep neural networks.
Bioinform., 2020
Briefings Bioinform., 2020
Ess-NEXG: Predict Essential Proteins by Constructing a Weighted Protein Interaction Network Based on Node Embedding and XGBoost.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output Control.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
A robust single cell clustering method based on subspace learning and partial imputation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
BMC Bioinform., December, 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Construction of Refined Protein Interaction Network for Predicting Essential Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Correlation Analysis of Mental Health Status and Sleep Quality in Helicobacter pylori Positive Patients.
J. Medical Imaging Health Informatics, 2019
J. Comput. Sci. Technol., 2019
J. Comput. Sci. Technol., 2019
Automatic ICD code assignment of Chinese clinical notes based on multilayer attention BiRNN.
J. Biomed. Informatics, 2019
BMC Bioinform., 2019
SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation.
Bioinform., 2019
BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks.
Bioinform., 2019
Bioinform., 2019
Big Data Min. Anal., 2019
Identification of Prognostic and Heterogeneous Breast Cancer Biomarkers Based on Fusion Network and Multiple Scoring Strategies.
Proceedings of the Intelligent Computing Theories and Application, 2019
LncRNA-disease association prediction through combining linear and non-linear features with matrix factorization and deep learning techniques.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
HNEDTI: Prediction of drug-target interaction based on heterogeneous network embedding.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
DualRank: multiplex network-based dual ranking for heterogeneous complex disease analysis.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Classification of Schizophrenia by Iterative Random Forest Feature Selection Based on DNA Methylation Array Data.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Predicting MicroRNA-Disease Associations Based on Improved MicroRNA and Disease Similarities.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Bioinform., 2018
Computational drug repositioning using low-rank matrix approximation and randomized algorithms.
Bioinform., 2018
Bioinform., 2018
DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
Bioinform., 2018
Big Data Min. Anal., 2018
Multi-scale Deep Convolutional Neural Network for Stroke Lesions Segmentation on CT Images.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2018
PBMarsNet: A Multivariate Adaptive Regression Splines Based Method to Reconstruct Gene Regulatory Networks.
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018
Proceedings of the Intelligent Computing Theories and Application, 2018
A Deep Learning Framework for Identifying Essential Proteins Based on Protein-Protein Interaction Network and Gene Expression Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Disease Inference with Symptom Extraction and Bidirectional Recurrent Neural Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2017
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Predicting Protein Functions by Using Unbalanced Random Walk Algorithm on Three Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
United Complex Centrality for Identification of Essential Proteins from PPI Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Complex., 2017
Comput. Biol. Chem., 2017
Bioinform., 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Proceedings of the Intelligent Computing Theories and Application, 2017
MEC: Misassembly error correction in contigs using a combination of paired-end reads and GC-contents.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
HybridDock: A Hybrid Protein-Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches.
J. Chem. Inf. Model., 2016
Neurocomputing, 2016
FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information.
BMC Bioinform., 2016
Predicting essential proteins based on subcellular localization, orthology and PPI networks.
BMC Bioinform., 2016
C-DEVA: Detection, evaluation, visualization and annotation of clusters from biological networks.
Biosyst., 2016
Drug repositioning based on comprehensive similarity measures and Bi-Random walk algorithm.
Bioinform., 2016
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016
The MSS of complex networks with centrality based preference and its application to biomolecular networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Construction of the spatial and temporal active protein interaction network for identifying protein complexes.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Predicting microRNA-environmental factor interactions based on bi-random walk and multi-label learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
An Apache Spark Implementation of Block Power Method for Computing Dominant Eigenvalues and Eigenvectors of Large-Scale Matrices.
Proceedings of the 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), 2016
2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Int. J. Data Min. Bioinform., 2015
Identifying protein complexes based on the integration of PPI network and gene expression data.
Int. J. Bioinform. Res. Appl., 2015
Int. J. Bioinform. Res. Appl., 2015
CytoNCA: A cytoscape plugin for centrality analysis and evaluation of protein interaction networks.
Biosyst., 2015
Bioinform., 2015
Predicting microRNA-disease associations by integrating multiple biological information.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
A two-step logistic regression algorithm for identifying individual-cancer-related genes.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
IEEE ACM Trans. Comput. Biol. Bioinform., 2014
Improving protein function prediction using domain and protein complexes in PPI networks.
BMC Syst. Biol., 2014
BMC Syst. Biol., 2014
Drug Target Identification Based on Structural Output Controllability of Complex Networks.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014
Searching SNP Combinations Related to Evolutionary Information of Human Populations on HapMap Data.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
2013
Identification of Essential proteins from Weighted protein-protein Interaction Networks.
J. Bioinform. Comput. Biol., 2013
An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation.
BMC Syst. Biol., 2013
Identifying protein complexes based on density and modularity in protein-protein interaction network.
BMC Syst. Biol., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
A clustering algorithm for identifying hierarchical and overlapping protein complexes in large PPI networks.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Identifying dynamic protein complexes based on gene expression profiles and PPI networks.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Prioritization of candidate genes based on disease similarity and protein's proximity in PPI networks.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data.
BMC Syst. Biol., 2012
Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.
BMC Bioinform., 2012
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
A local average connectivity-based method for identifying essential proteins from the network level.
Comput. Biol. Chem., 2011
BMC Syst. Biol., 2011
A comparison of the functional modules identified from time course and static PPI network data.
BMC Bioinform., 2011
A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011
Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
Int. J. Data Min. Bioinform., 2010
An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010
2009
Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient.
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009
GO Semantic Similarity-Based False Positive Reduction of Protein-Protein Interactions.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Proceedings of the International Joint Conferences on Bioinformatics, 2009
2008
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.
BMC Bioinform., 2008
A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks.
Proceedings of the Bioinformatics Research and Applications, 2008
Proceedings of the 9th International Conference for Young Computer Scientists, 2008
An Improved Method Based on Maximal Clique for Predicting Interactions in Protein Interaction Networks.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008
A Fast Agglomerate Algorithm for Mining Functional Modules in Protein Interaction Networks.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008