Xiu-Fen Zou

Orcid: 0000-0001-5294-0764

According to our database1, Xiu-Fen Zou authored at least 63 papers between 1996 and 2024.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2024
Mathematical modeling and dynamic analysis for cancer resistance incorporating persister cells.
Commun. Nonlinear Sci. Numer. Simul., 2024

2023
Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors.
Int. J. Bifurc. Chaos, January, 2023

2022
scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment.
Comput. Math. Appl., 2022

2021
SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data.
IEEE J. Biomed. Health Informatics, 2021

scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data.
IEEE J. Biomed. Health Informatics, 2021

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients.
PLoS Comput. Biol., 2021

Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria.
Int. J. Bifurc. Chaos, 2021

Influence of the Binomial Crossover on Performance of Randomized Search Heuristics.
CoRR, 2021

2020
Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes.
IEEE Trans. Biomed. Eng., 2020

scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data.
PLoS Comput. Biol., 2020

Tensor-based mathematical framework and new centralities for temporal multilayer networks.
Inf. Sci., 2020

2019
Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Integrating network topology, gene expression data and GO annotation information for protein complex prediction.
J. Bioinform. Comput. Biol., 2019

Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method.
CoRR, 2019

Control of multilayer biological networks and applied to target identification of complex diseases.
BMC Bioinform., 2019

2018
Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information".
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems.
SIAM J. Appl. Math., 2018

2017
Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.
PLoS Comput. Biol., 2017

Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis.
Comput. Math. Methods Medicine, 2017

Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization.
Comput. Math. Methods Medicine, 2017

Control Energy and controllability of multilayer Networks.
Adv. Complex Syst., 2017

2016
Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective.
Int. J. Bifurc. Chaos, 2016

Identifying disease modules and components of viral infections based on multi-layer networks.
Sci. China Inf. Sci., 2016

Inference of genetic regulatory network for stem cell using single cells expression data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
A New Method for Detecting Protein Complexes based on the Three Node Cliques.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast.
Quant. Biol., 2015

A binary differential evolution algorithm learning from explored solutions.
Neurocomputing, 2015

Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics.
Int. J. Bifurc. Chaos, 2015

Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method.
CoRR, 2015

Optimal Control Strategy for Abnormal Innate Immune Response.
Comput. Math. Methods Medicine, 2015

Estimation of control Energy and control Strategies for Complex Networks.
Adv. Complex Syst., 2015

2014
Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts.
Inf. Sci., 2014

Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm.
Proceedings of the Intelligent Computing Theory - 10th International Conference, 2014

2013
Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

How can surrogates influence the convergence of evolutionary algorithms?
Swarm Evol. Comput., 2013

Diversity-maintained differential evolution embedded with gradient-based local search.
Soft Comput., 2013

Complex Dynamical Analysis of a Coupled Network from Innate Immune responses.
Int. J. Bifurc. Chaos, 2013

A triangulation-based hole patching method using differential evolution.
Comput. Aided Des., 2013

Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization.
BMC Syst. Biol., 2013

2012
Iteration and optimization scheme for the reconstruction of 3D surfaces based on non-uniform rational B-splines.
Comput. Aided Des., 2012

Synchronization ability of coupled cell-cycle oscillators in changing environments.
BMC Syst. Biol., 2012

2011
Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front.
Inf. Sci., 2011

Drift conditions for estimating the first hitting times of evolutionary algorithms.
Int. J. Comput. Math., 2011

A Population-Based Hybrid Extremal Optimization Algorithm.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm.
Proceedings of the Advances in Computation and Intelligence - 5th International Symposium, 2010

2009
A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems.
Proceedings of the first ACM/SIGEVO Summit on Genetic and Evolutionary Computation, 2009

Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009

2008
A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems.
IEEE Trans. Syst. Man Cybern. Part B, 2008

Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm.
Biosyst., 2008

Optimal coordination of protection relays using new hybrid evolutionary algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2008

A Genetic Algorithm approach for selecting Tikhonov regularization parameter.
Proceedings of the IEEE Congress on Evolutionary Computation, 2008

2007
An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space.
Proceedings of the Advances in Computation and Intelligence, 2007

A New Evolutionary Decision Theory for Many-Objective Optimization Problems.
Proceedings of the Advances in Computation and Intelligence, 2007

2006
Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm.
Proceedings of the Simulated Evolution and Learning, 6th International Conference, 2006

2005
Fast annealing genetic algorithm for multi-objective optimization problems.
Int. J. Comput. Math., 2005

2004
A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics.
Proceedings of the Parallel Problem Solving from Nature, 2004

2003
A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics.
J. Comput. Sci. Technol., 2003

An efficient dynamical evolutionary algorithm for global optimization.
Int. J. Comput. Math., 2003

2002
A dynamical evolutionary algorithm for constrained optimization problems.
Proceedings of the 2002 Congress on Evolutionary Computation, 2002

1996
Use of Multi-scalar Analysis for Building Lattice Models of PDE's.
Parallel Algorithms Appl., 1996


  Loading...