Xiuwei Zhang

According to our database, Xiuwei Zhang authored at least 11 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

CLARIFY: cell-cell interaction and gene regulatory network refinement from spatially resolved transcriptomics.

Mihir Bafna, Hechen Li, Xiuwei Zhang

Bioinform., 2023

2022

GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory Networks.

Harsh Shrivastava, Xiuwei Zhang, Le Song, Srinivas Aluru

J. Comput. Biol., 2022

2021

Maximum likelihood reconstruction of ancestral networks by integer linear programming.

Vaibhav Rajan, Ziqi Zhang, Carl Kingsford, Xiuwei Zhang

Bioinform., 2021

2016

NEMo: An Evolutionary Model with Modularity for PPI Networks.

Min Ye, Gabriela C. Racz, Qijia Jiang, Xiuwei Zhang, Bernard M. E. Moret

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2012

Refining Regulatory Networks through Phylogenetic Transfer of Information.

Xiuwei Zhang, Bernard M. E. Moret

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

2011

Transcriptional Regulatory Networks across Species - Evolution, Inference, and Refinement.

Xiuwei Zhang

PhD thesis, 2011

ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks.

Xiuwei Zhang, Bernard M. E. Moret

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

2010

Refining transcriptional regulatory networks using network evolutionary models and gene histories.

Xiuwei Zhang, Bernard M. E. Moret

Algorithms Mol. Biol., 2010

2009

Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models.

Xiuwei Zhang, Bernard M. E. Moret

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

2008

Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach.

Xiuwei Zhang, Bernard M. E. Moret

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks.

Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008