Xun Gu

According to our database, Xun Gu authored at least 22 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

MATTE: a pipeline of transcriptome module alignment for anti-noise phenotype-gene-related analysis.

Guoxing Cai, Wenyi Zhao, Zhan Zhou, Xun Gu

Briefings Bioinform., July, 2023

TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database.

Jingcheng Wu, Wenfan Chen, Yuxuan Zhou, Ying Chi, Xian-Sheng Hua, Jian Wu, Xun Gu, Shuqing Chen, Zhan Zhou

Genom. Proteom. Bioinform., April, 2023

2022

MODIG: integrating multi-omics and multi-dimensional gene network for cancer driver gene identification based on graph attention network model.

Wenyi Zhao, Xun Gu, Shuqing Chen, Jian Wu, Zhan Zhou

Bioinform., October, 2022

2021

CanDriS: posterior profiling of cancer-driving sites based on two-component evolutionary model.

Wenyi Zhao, Jingwen Yang, Jingcheng Wu, Guoxing Cai, Yao Zhang, Jeffrey Haltom, Weijia Su, Michael J. Dong, Shuqing Chen, Jian Wu, Zhan Zhou, Xun Gu

Briefings Bioinform., 2021

2019

Estimating the strength of expression conservation from high throughput RNA-seq data.

Xun Gu, Hang Ruan, Jingwen Yang

Bioinform., 2019

2018

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis.

Jingcheng Wu, Wenyi Zhao, Binbin Zhou, Zhixi Su, Xun Gu, Zhan Zhou, Shuqing Chen

Genom. Proteom. Bioinform., 2018

2017

Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis.

Zhining Sa, Jingqi Zhou, Yangyun Zou, Zhixi Su, Xun Gu

Genom. Proteom. Bioinform., 2017

2016

Understanding tissue expression evolution: from expression phylogeny to phylogenetic network.

Xun Gu

Briefings Bioinform., 2016

Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates.

Xun Gu

Briefings Bioinform., 2016

2005

<i>SplitTester</i>: software to identify domains responsible for functional divergence in protein family.

Xiang Gao, Kent Vander Velden, Daniel F. Voytas, Xun Gu

BMC Bioinform., 2005

GeneContent: software for whole-genome phylogenetic analysis.

Xun Gu, Wei Huang, Dongping Xu, Hongmei Zhang

Bioinform., 2005

Gene Network: Model, Dynamics and Simulation.

Shiquan Wu, Xun Gu

Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

2003

Algorithms for Multiple Genome Rearrangement by Signed Reversals.

Shiquan Wu, Xun Gu

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002

Evolutionary and expression profiles of gene families crucial for central nervous system development.

Yufeng Wang, Xun Gu

Inf. Sci., 2002

Expression pattern of yeast sporulation: a case study for regulatory changes after yeast genome duplication.

Wei Huang, Dan Nettleton, Xun Gu

Inf. Sci., 2002

Evolutionary analysis of functional divergence in TGF- signaling pathway.

Jianying Gu, Xun Gu

Inf. Sci., 2002

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

Xun Gu, Kent Vander Velden

Bioinform., 2002

Multiple Genome Rearrangement by Reversals.

Shiquan Wu, Xun Gu

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Evolutionary Analysis for Developmental Profiles of Gene Family Expression in Central Nervous System.

Yufeng Wang, Xun Gu

Proceedings of the 6th Joint Conference on Information Science, 2002

Functional Divergence in TGF-b Signaling Pathway.

Jianying Gu, Xun Gu

Proceedings of the 6th Joint Conference on Information Science, 2002

2001

Mathematical Modeling for Functional Divergence after Gene Duplication.

Xun Gu

J. Comput. Biol., 2001

A Greedy Algorithm for Optimal Recombination.

Shiquan Wu, Xun Gu

Proceedings of the Computing and Combinatorics, 7th Annual International Conference, 2001