Dan Nettleton

According to our database, Dan Nettleton authored at least 22 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Adjusting for gene-specific covariates to improve RNA-seq analysis.

Hyeongseon Jeon, Kyu-Sang Lim, Yet Nguyen, Dan Nettleton

Bioinform., August, 2023

Stability of Random Forests and Coverage of Random-Forest Prediction Intervals.

Yan Wang, Huaiqing Wu, Dan Nettleton

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2021

Variable importance assessments and backward variable selection for multi-sample problems.

Liuhua Peng, Long Qu, Dan Nettleton

J. Multivar. Anal., 2021

2020

Tree aggregation for random forest class probability estimation.

Andrew J. Sage, Ulrike Genschel, Dan Nettleton

Stat. Anal. Data Min., 2020

Conformal Prediction Intervals for Neural Networks Using Cross Validation.

Saeed Khaki, Dan Nettleton

CoRR, 2020

rmRNAseq: differential expression analysis for repeated-measures RNA-seq data.

Yet Nguyen, Dan Nettleton

Bioinform., 2020

2019

Sparse model identification and learning for ultra-high-dimensional additive partially linear models.

Xinyi Li, Li Wang, Dan Nettleton

J. Multivar. Anal., 2019

Regression-Enhanced Random Forests.

Haozhe Zhang, Dan Nettleton, Zhengyuan Zhu

CoRR, 2019

2018

Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning.

Naihui Zhou, Zachary D. Siegel, Scott Zarecor, Nigel Lee, Darwin A. Campbell, Carson M. Andorf, Dan Nettleton, Carolyn J. Lawrence-Dill, Baskar Ganapathysubramanian, Jonathan W. Kelly, Iddo Friedberg

PLoS Comput. Biol., 2018

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets.

Kun Liang, Chuanlong Du, Hankun You, Dan Nettleton

BMC Bioinform., 2018

2015

SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.

Sam Benidt, Dan Nettleton

Bioinform., 2015

2014

Copy number variation detection using next generation sequencing read counts.

Heng Wang, Dan Nettleton, Kai Ying

BMC Bioinform., 2014

An improved method for computing q-values when the distribution of effect sizes is asymmetric.

Megan Orr, Peng Liu, Dan Nettleton

Bioinform., 2014

2011

An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies.

Lars Koesterke, Daniel Stanzione, Matthew W. Vaughn, Stephen M. Welch, Waclaw Kusnierczyk, Jinliang Yang, Cheng-Ting Yeh, Dan Nettleton, Patrick S. Schnable

Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2008

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis.

Dan Nettleton, Justin Recknor, James M. Reecy

Bioinform., 2008

2007

Pooling mRNA in microarray experiments and its effect on power.

Wuyan Zhang, Alicia L. Carriquiry, Dan Nettleton, Jack C. M. Dekkers

Bioinform., 2007

2006

Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experiments.

Rhonda DeCook, Dan Nettleton, Carol Foster, Eve Syrkin Wurtele

Comput. Stat. Data Anal., 2006

Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes.

David S. Skibbe, Xiujuan Wang, Xuefeng Zhao, Lisa A. Borsuk, Dan Nettleton, Patrick S. Schnable

Bioinform., 2006

2005

BarleyBase - an expression profiling database for plant genomics.

Lishuang Shen, Jian Gong, Rico A. Caldo, Dan Nettleton, Dianne Cook, Roger P. Wise, Julie A. Dickerson

Nucleic Acids Res., 2005

2003

Principal Components Regression With Data Chosen Components and Related Methods.

J. T. Gene Hwang, Dan Nettleton

Technometrics, 2003

2002

Expression pattern of yeast sporulation: a case study for regulatory changes after yeast genome duplication.

Wei Huang, Dan Nettleton, Xun Gu

Inf. Sci., 2002

Mining MEDLINE: Abstracts, Sentences, or Phrases?

Jing Ding, Daniel Berleant, Dan Nettleton, Eve Syrkin Wurtele

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002