Yassene Mohammed

According to our database, Yassene Mohammed authored at least 21 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Privacy-preserving multicenter differential protein abundance analysis with FedProt.

Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari, Christine von Törne, Teresa Barth, Lisa Schweizer, Pieter Giesbertz, Johannes R. Schmidt, Stefan Kalkhof, Janina Müller-Deile, Peter A. van Veelen, Yassene Mohammed, Elke Hammer, Lis Arend, Klaudia Adamowicz, Tanja Laske, Anne Hartebrodt, Tobias Frisch, Chen Meng, Julian O. Matschinske, Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan F. Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Küster, Jan Baumbach, Olga I. Zolotareva

Nat. Comput. Sci., August, 2025

2024

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt.

Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari, Christine von Törne, Teresa Barth, Lisa Schweizer, Pieter Giesbertz, Johannes R. Schmidt, Stefan Kalkhof, Janina Müller-Deile, Peter A. van Veelen, Yassene Mohammed, Elke Hammer, Lis Arend, Klaudia Adamowicz, Tanja Laske, Anne Hartebrodt, Tobias Frisch, Chen Meng, Julian O. Matschinske, Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan F. Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Küster, Jan Baumbach, Olga I. Zolotareva

CoRR, 2024

2021

Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays.

Yassene Mohammed, Pallab Bhowmick, Sarah A. Michaud, Albert Sickmann, Christoph H. Borchers

Bioinform., 2021

2018

MRMAssayDB: an integrated resource for validated targeted proteomics assays.

Pallab Bhowmick, Yassene Mohammed, Christoph H. Borchers

Bioinform., 2018

Visualizing and comparing results of different peptide identification methods.

Yassene Mohammed, Magnus Palmblad

Briefings Bioinform., 2018

Workflows Orchestrating Workflows: Thousands of Queries and Their Fault Tolerance Using APIs of Omics Web Resources.

Yassene Mohammed

Proceedings of the 14th IEEE International Conference on e-Science, 2018

2016

Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services.

Arzu Tugce Guler, Cathelijn J. F. Waaijer, Yassene Mohammed, Magnus Palmblad

J. Informetrics, 2016

2015

Scientific workflow optimization for improved peptide and protein identification.

Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad

BMC Bioinform., 2015

2014

Privacy/performance trade-off in private search on bio-medical data.

Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith

Future Gener. Comput. Syst., 2014

A new optimization phase for scientific workflow management systems.

Sonja Holl, Olav Zimmermann, Magnus Palmblad, Yassene Mohammed, Martin Hofmann-Apitius

Future Gener. Comput. Syst., 2014

Automatic Peptides Selection for Targeted Proteomics.

Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

2013

Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications.

Sonja Holl, M. Shahbaz Memon, Bernd Schuller, Morris Riedel, Yassene Mohammed, Magnus Palmblad, Andrew S. Grimshaw

Proceedings of the 42nd International Conference on Parallel Processing, 2013

2012

Fast confidential search for bio-medical data using Bloom filters and Homomorphic Cryptography.

Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith

Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011

Data Decomposition in Biomedical e-Science Applications.

Yassene Mohammed, Shayan Shahand, Vladimir Korkhov, Angela C. M. Luyf, Barbera D. C. van Schaik, Matthan W. A. Caan, Antoine H. C. van Kampen, Magnus Palmblad, Sílvia D. Olabarriaga

Proceedings of the IEEE 7th International Conference on E-Science, 2011

2010

Reaching for the Cloud: On the Lessons Learned from Grid Computing Technology Transfer Process to the Biomedical Community.

Yassene Mohammed, Frank Dickmann, Ulrich Sax, Gabriele von Voigt, Matthew Smith, Otto Rienhoff

Proceedings of the MEDINFO 2010, 2010

On Transferring the Grid Technology to the Biomedical Community.

Yassene Mohammed, Ulrich Sax, Frank Dickmann, Jörg Lippert, Juri Solodenko, Gabriele von Voigt, Matthew Smith, Otto Rienhoff

Proceedings of the Healthgrid Applications and Core Technologies, 2010

2009

MediGRID: Towards a user friendly secured grid infrastructure.

Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias A. Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michal Vossberg, Fred Viezens, Anette Weisbecker

Future Gener. Comput. Syst., 2009

Visualization in Health Grid Environments: A Novel Service and Business Approach.

Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias A. Knoch, Ulrich Sax

Proceedings of the Grid Economics and Business Models, 6th International Workshop, 2009

2008

Data protection and data security concept for medical applications in a grid computing environment.

Yassene Mohammed

PhD thesis, 2008

2007

The Integration of Grid Resources into a Portal for Research Collaboratories.

Yassene Mohammed, Sabine Rey, Fabian Rakebrandt, Ulrich Sax

Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Shortcomings of Current Grid Middlewares Regarding Privacy in HealthGrids.

Yassene Mohammed, Ulrich Sax, Fred Viezens, Otto Rienhoff

Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007