Thomas Steinke
Orcid: 0000-0002-0338-8042Affiliations:
- Zuse Institute Berlin (ZIB), Germany
According to our database1,
Thomas Steinke
authored at least 46 papers
between 1999 and 2023.
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Bibliography
2023
Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods.
CoRR, 2023
2022
Concurr. Comput. Pract. Exp., 2022
A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs.
Proceedings of the IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, 2022
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA.
Proceedings of the FPGA '22: The 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, Virtual Event, USA, 27 February 2022, 2022
2021
Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs.
Proceedings of the IWOCL'21: International Workshop on OpenCL, Munich Germany, April, 2021, 2021
2020
Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS.
Proceedings of the IEEE/ACM Workshop on Memory Centric High Performance Computing, 2020
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, 2020
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids.
Proceedings of the Euro-Par 2020: Parallel Processing Workshops, 2020
2019
Proceedings of the High Performance Computing, 2019
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019
2018
Porting the MPI-parallelised LES model PALM to multi-GPU systems and many integrated core processors - an experience report.
Int. J. Comput. Sci. Eng., 2018
DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018
2017
Proceedings of the High Performance Computing, 2017
2016
Proceedings of the Software for Exascale Computing - SPPEXA 2013-2015, 2016
Proceedings of the Software for Exascale Computing - SPPEXA 2013-2015, 2016
Proceedings of the Euro-Par 2016: Parallel Processing, 2016
2015
Concurr. Comput. Pract. Exp., 2015
2014
Comput. Sci. Res. Dev., 2014
Concurr. Comput. Pract. Exp., 2014
A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters.
Proceedings of the International Conference for High Performance Computing, 2014
Proceedings of the Euro-Par 2014 Parallel Processing, 2014
2013
Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing.
J. Parallel Distributed Comput., 2013
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment.
J. Cheminformatics, 2013
Proceedings of the International Conference for High Performance Computing, 2013
An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects.
Proceedings of the Euro-Par 2013: Parallel Processing Workshops, 2013
2012
Solutions for biomedical grid computing - Case studies from the D-Grid project Services@MediGRID.
J. Comput. Sci., 2012
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment.
J. Cheminformatics, 2012
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics.
J. Grid Comput., 2012
Comparing the implementation of two-dimensional numerical quadrature on GPU, FPGA and ClearSpeed systems to study electron scattering by atoms.
Concurr. Comput. Pract. Exp., 2012
2011
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science.
J. Cheminformatics, 2011
Proceedings of the 3rd International Workshop on Science Gateways for Life Sciences, 2011
2010
Nucleic Acids Res., 2010
Programming Challenges for the Implementation of Numerical Quadrature in Atomic Physics on FPGA and GPU Accelerators.
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010
2009
Future Gener. Comput. Syst., 2009
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors.
Algorithms, 2009
Proceedings of the Grid Economics and Business Models, 6th International Workshop, 2009
2006
BMC Bioinform., 2006
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs.
Proceedings of the Distributed, 2006
ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services.
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006
2005
BMC Bioinform., 2005
2004
Proceedings of the Data Integration in the Life Sciences, First International Workshop, 2004
2001
Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes.
J. Comput. Chem., 2001
1999
Density functional study of guanine quartet structures.
Proceedings of the German Conference on Bioinformatics, 1999