Yongqing Zhang

This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.

Bibliography

2026
Prediction of cancer drug response based on heterogeneous graph neural networks and multi-omics data.
Neural Networks, 2026

2025
Improved DOA Estimation Method Based on Globally Bounded Nonlinear Covariance via Acoustic Vector Sensor Array Under Impulsive Noise.
Circuits Syst. Signal Process., November, 2025

A Comprehensive Adaptive Interpretable Takagi-Sugeno-Kang Fuzzy Classifier for Fatigue Driving Detection.
IEEE Trans. Fuzzy Syst., January, 2025

Dynamic Response Testing Based on Pulsed Laser and WOA-BP Neural Network.
IEEE Trans. Instrum. Meas., 2025

MMGCSyn: Explainable synergistic drug combination prediction based on multimodal fusion.
Future Gener. Comput. Syst., 2025

An overview of computational methods in single-cell transcriptomic cell type annotation.
Briefings Bioinform., 2025

Supervised pre-training for feature extraction in cell type annotation of single-cell multi-omics data.
Appl. Soft Comput., 2025

Cancer Drug Response Prediction Based on Graph Neural Networks and Cross-Attention.
Proceedings of the International Joint Conference on Neural Networks, 2025

Enhancing Drug Synergy Prediction via flexible Fusion of Multimodal Heterogeneous Data.
Proceedings of the International Joint Conference on Neural Networks, 2025

Single Cell Mosaic Integration via Regulatory Graph Guided Variational Cross-modal Fusion.
Proceedings of the International Joint Conference on Neural Networks, 2025

GGANet: A Geometry-Enhanced Gated Attention Network for Drug-Target Interaction Prediction.
Proceedings of the International Joint Conference on Neural Networks, 2025

Distribution and Knowledge Alignment-based Single-cell Multi-omics Cell Type Annotation.
Proceedings of the International Joint Conference on Neural Networks, 2025

2024
CT-Net: an interpretable CNN-Transformer fusion network for fNIRS classification.
Medical Biol. Eng. Comput., October, 2024

SFT-Net: A Network for Detecting Fatigue From EEG Signals by Combining 4D Feature Flow and Attention Mechanism.
IEEE J. Biomed. Health Informatics, August, 2024

CSF-GTNet: A Novel Multi-Dimensional Feature Fusion Network Based on Convnext-GeLU- BiLSTM for EEG-Signals-Enabled Fatigue Driving Detection.
IEEE J. Biomed. Health Informatics, May, 2024

An EEG-based cross-subject interpretable CNN for game player expertise level classification.
Expert Syst. Appl., March, 2024

A multiscale feature fusion network based on attention mechanism for motor imagery EEG decoding.
Appl. Soft Comput., January, 2024

Innovation in Financial Enterprise Risk Prediction Model: A Hybrid Deep Learning Technique Based on CNN-Transformer-WT.
J. Organ. End User Comput., 2024

scAuto as a comprehensive framework for single-cell chromatin accessibility data analysis.
Comput. Biol. Medicine, 2024

Cell-Specific Highly Correlated Network for Self-Supervised Distillation in Cell Type Annotation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

A Local-Ascending-Global Learning Strategy for Brain-Computer Interface.
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
Emotion recognition based on convolutional gated recurrent units with attention.
Connect. Sci., December, 2023

Interpretable single-cell transcription factor prediction based on deep learning with attention mechanism.
Comput. Biol. Chem., October, 2023

Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding.
Bioinform., October, 2023

An EEG-based Brain Cognitive Dynamic Recognition Network for representations of brain fatigue.
Appl. Soft Comput., October, 2023

HEAP: a task adaptive-based explainable deep learning framework for enhancer activity prediction.
Briefings Bioinform., September, 2023

A deep learning network based on CNN and sliding window LSTM for spike sorting.
Comput. Biol. Medicine, June, 2023

T-A-MFFNet: Multi-feature fusion network for EEG analysis and driving fatigue detection based on time domain network and attention network.
Comput. Biol. Chem., June, 2023

HAMPLE: deciphering TF-DNA binding mechanism in different cellular environments by characterizing higher-order nucleotide dependency.
Bioinform., May, 2023

Digital Image Correlation with a Prism Camera and Its Application in Complex Deformation Measurement.
Sensors, 2023

SHNN: A single-channel EEG sleep staging model based on semi-supervised learning.
Expert Syst. Appl., 2023

DeepChrom: A Diffusion-Based Framework for Long-Tailed Chromatin State Prediction.
Proceedings of the Pattern Recognition and Computer Vision - 6th Chinese Conference, 2023

Infinity-Norm Weighted Low-Order Sparse Iterative DOA Estimation Under Impulsive Noise.
Proceedings of the IEEE International Conference on Signal Processing, 2023

HGTDG: An Interpretable Heterogeneous Graph Transformer Framework for Cancer Driver Gene Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

KDProg: A Knowledge distillation graph neural network for cancer prognosis prediction and analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Exploring Parameter-Efficient Fine-Tuning of a Large-Scale Pre-Trained Model for scRNA-seq Cell Type Annotation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
A Two-Step Calibration Method for Vision Measurement With Large Field of View.
IEEE Trans. Instrum. Meas., 2022

Fusion prior gene network for high reliable single-cell gene regulatory network inference.
Comput. Biol. Medicine, 2022

Towards a better understanding of TF-DNA binding prediction from genomic features.
Comput. Biol. Medicine, 2022

Multiple Sequence Alignment based on deep Q network with negative feedback policy.
Comput. Biol. Chem., 2022

A hybrid ensemble and evolutionary algorithm for imbalanced classification and its application on bioinformatics.
Comput. Biol. Chem., 2022

A survey on the algorithm and development of multiple sequence alignment.
Briefings Bioinform., 2022

A novel convolution attention model for predicting transcription factor binding sites by combination of sequence and shape.
Briefings Bioinform., 2022

Predicting cell type-specific effects of variants on TF-DNA binding by meta-learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Single-cell TF-DNA binding prediction and analysis based on transfer learning framework.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Self-representation and Class-Specificity Distribution Based Multi-View Clustering.
Neurocomputing, 2021

Single-cell RNA Sequencing Reveals Thoracolumbar Vertebra Heterogeneity and Rib-genesis in Pigs.
Genom. Proteom. Bioinform., 2021

CAE-CNN: Predicting transcription factor binding site with convolutional autoencoder and convolutional neural network.
Expert Syst. Appl., 2021

MFFNet: Multi-dimensional Feature Fusion Network based on attention mechanism for sEMG analysis to detect muscle fatigue.
Expert Syst. Appl., 2021

Regional-scale vegetation-climate interactions on the Qinghai-Tibet Plateau.
Ecol. Informatics, 2021

High-resolution transcription factor binding sites prediction improved performance and interpretability by deep learning method.
Briefings Bioinform., 2021

BindTransNet: A Transferable Transformer-Based Architecture for Cross-Cell Type DNA-Protein Binding Sites Prediction.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

By hybrid neural networks for prediction and interpretation of transcription factor binding sites based on multi-omics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
DeepSite: bidirectional LSTM and CNN models for predicting DNA-protein binding.
Int. J. Mach. Learn. Cybern., 2020

A point-of-interest suggestion algorithm in Multi-source geo-social networks.
Eng. Appl. Artif. Intell., 2020

A Review About Transcription Factor Binding Sites Prediction Based on Deep Learning.
IEEE Access, 2020

SOTB: Semi-Supervised Oversampling Approach Based on Trigonal Barycenter Theory.
IEEE Access, 2020

GRRFNet: Guided Regularized Random Forest-based Gene Regulatory Network Inference Using Data Integration.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Identification of DNA-protein binding sites by bootstrap multiple convolutional neural networks on sequence information.
Eng. Appl. Artif. Intell., 2019

How to balance the bioinformatics data: pseudo-negative sampling.
BMC Bioinform., 2019

2018
Concept Factorization by Joint Locality-constrained and ℓ 2, 1-norm Regularization for Image Representation.
J. Multiple Valued Log. Soft Comput., 2018

ICANet: a simple cascade linear convolution network for face recognition.
EURASIP J. Image Video Process., 2018

Design and Experiments of a Redundantly Actuated Cable-Driven Parallel Robot.
Proceedings of the IEEE International Conference on Robotics and Biomimetics, 2018

ENSEMBLE-CNN: Predicting DNA Binding Sites in Protein Sequences by an Ensemble Deep Learning Method.
Proceedings of the Intelligent Computing Theories and Application, 2018

2017
ERMPD: An efficient and robustness membrane potential driven supervised learning in spiking neural networks.
Proceedings of the 2017 IEEE Symposium Series on Computational Intelligence, 2017

2016
GeNemo: a search engine for web-based functional genomic data.
Nucleic Acids Res., 2016

2013
Mining effective multi-segment sliding window for pathogen incidence rate prediction.
Data Knowl. Eng., 2013

Using gene expression programming to infer gene regulatory networks from time-series data.
Comput. Biol. Chem., 2013

2012
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine.
Comput. Biol. Medicine, 2012

Using ensemble methods to deal with imbalanced data in predicting protein-protein interactions.
Comput. Biol. Chem., 2012

Marketing Positioning System Designing Based on Extenics.
Proceedings of the 2012 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology, 2012

1997
Principal component analysis of cross sections of tongue shapes in vowel production.
Speech Commun., 1997

1994
A reduced parameter bilinear time series model.
IEEE Trans. Signal Process., 1994


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