Yoshifumi Fukunishi

Orcid: 0000-0002-7264-250X

According to our database1, Yoshifumi Fukunishi authored at least 20 papers between 1997 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2021
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation.
J. Chem. Inf. Model., 2021

Generalized-ensemble method study: A helix-mimetic compound inhibits protein-protein interaction by long-range and short-range intermolecular interactions.
J. Comput. Chem., 2021

2020
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling.
J. Chem. Inf. Model., 2020

2016
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling.
J. Comput. Chem., 2016

2015
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method.
J. Chem. Inf. Model., 2015

Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking.
J. Comput. Chem., 2015

2014
Prediction of Synthetic Accessibility Based on Commercially Available Compound Databases.
J. Chem. Inf. Model., 2014

2011
Selection of In Silico Drug Screening Results for G-Protein-Coupled Receptors by Using Universal Active Probes.
J. Chem. Inf. Model., 2011

Definition of Drug-Likeness for Compound Affinity.
J. Chem. Inf. Model., 2011

2010
Selection of In Silico Drug Screening Results by Using Universal Active Probes (UAPs).
J. Chem. Inf. Model., 2010

2009
In Silico Fragment Screening by Replica Generation (FSRG) Method for Fragment-Based Drug Design.
J. Chem. Inf. Model., 2009

Protein-Ligand Binding Free Energy Calculation by the Smooth Reaction Path Generation (SRPG) Method.
J. Chem. Inf. Model., 2009

2008
Improvement of Protein-Compound Docking Scores by Using Amino-Acid Sequence Similarities of Proteins.
J. Chem. Inf. Model., 2008

In Silico Drug Screening Based on a Protein-Compound Affinity Matrix.
Proceedings of the International Conference on Biocomputation, 2008

2006
Noise Reduction Method for Molecular Interaction Energy: Application to in Silico Drug Screening and in Silico Target Protein Screening.
J. Chem. Inf. Model., 2006

An Efficient in Silico Screening Method Based on the Protein-Compound Affinity Matrix and Its Application to the Design of a Focused Library for Cytochrome P450 (CYP) Ligands.
J. Chem. Inf. Model., 2006

A Virtual Active Compound Produced from the Negative Image of a Ligand-binding Pocket, and its Application to in-silico Drug Screening.
J. Comput. Aided Mol. Des., 2006

2004
A hybrid method of molecular dynamics and harmonic dynamics for docking of flexible ligand to flexible receptor.
J. Comput. Chem., 2004

2000
Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
Bioinform., 2000

1997
Potential of mean force calculation of solute molecules in water by a modified solvent-accessible surface method.
J. Comput. Chem., 1997


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