Kota Kasahara

According to our database, Kota Kasahara authored at least 12 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex.

Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono

PLoS Comput. Biol., 2022

2020

Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling.

Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura

J. Chem. Inf. Model., 2020

2019

Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly.

Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara

J. Comput. Chem., 2019

2018

Molecular dynamics coupled with a virtual system for effective conformational sampling.

Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo

J. Comput. Chem., 2018

2017

An FPGA Accelerator for Molecular Dynamics Simulation Using OpenCL.

Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara

Int. J. Networked Distributed Comput., 2017

2016

mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories.

Kota Kasahara, Neetha Mohan, Ikuo Fukuda, Haruki Nakamura

Bioinform., 2016

Architecture of an FPGA accelerator for molecular dynamics simulation using OpenCL.

Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara

Proceedings of the 15th IEEE/ACIS International Conference on Computer and Information Science, 2016

2015

Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking.

Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura

J. Comput. Chem., 2015

Development of Superconducting Tunnel Junction detectors as a far-infrared photon-by-photon spectrometer for neutrino decay search.

Yuji Takeuchi, Shin-Hong Kim, Kenichi Takemasa, Kenji Kiuchi, Kazuki Nagata, Kota Kasahara, Takuya Okudaira, Tatsuya Ichimura, Masahiro Kanamaru, Kouya Moriuchi, Ren Senzaki, Shunsuke Yagi, Hirokazu Ikeda, Shuji Matsuura, Takehiko Wada, Takuo Yoshida, Shota Komura, Keisuke Orikasa, Ryuta Hirose, Yukihiro Kato, Masashi Hazumi, Yasuo Arai, Shigetomo Shiki, Masahiro Ukibe, Go Fujii, Tetsuya Adachi, Masataka Ohkubo, Erik Ramberg, Jonghee Yoo, Mark Kozlovsky, Paul Rubinov, Dmitri Sergatskov, Hirokazu Ishino, Atsuko Kibayashi, Satoru Mima, Soo-Bong Kim

Proceedings of the 2015 IEEE International Instrumentation and Measurement Technology Conference (I2MTC) Proceedings, 2015

2014

GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes.

Kota Kasahara, Kengo Kinoshita

BMC Bioinform., 2014

2013

Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions.

Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita

J. Chem. Inf. Model., 2013

2010

Ligand-binding site prediction of proteins based on known fragment-fragment interactions.

Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi

Bioinform., 2010