Yudi Pawitan

According to our database, Yudi Pawitan authored at least 33 papers between 1993 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Isoform-level quantification for single-cell RNA sequencing.

Lu Pan, Huy Q. Dinh, Yudi Pawitan, Trung-Nghia Vu

Bioinform., 2022

2021

Circall: fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data.

Dat Thanh Nguyen, Quang Thinh Trac, Thi-Hau Nguyen, Ha-Nam Nguyen, Nir Ohad, Yudi Pawitan, Trung-Nghia Vu

BMC Bioinform., 2021

2020

Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.

Wenjiang Deng, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu

Bioinform., 2020

2019

Cell-level somatic mutation detection from single-cell RNA sequencing.

Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan

Bioinform., 2019

2018

Sparse pathway-based prediction models for high-throughput molecular data.

Sangin Lee, Youngjo Lee, Yudi Pawitan

Comput. Stat. Data Anal., 2018

Isoform-level gene expression patterns in single-cell RNA-sequencing data.

Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen

Bioinform., 2018

2016

Beta-Poisson model for single-cell RNA-seq data analyses.

Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan

Bioinform., 2016

2015

A random-effect model approach for group variable selection.

Sangin Lee, Yudi Pawitan, Youngjo Lee

Comput. Stat. Data Anal., 2015

Integration of somatic mutation, expression and functional data reveals potential driver genes predictive of breast cancer survival.

Chen Suo, Olga Hrydziuszko, Donghwan Lee, Setia Pramana, Dhany Saputra, Himanshu Joshi, Stefano Calza, Yudi Pawitan

Bioinform., 2015

Rediscovery rate estimation for assessing the validation of significant findings in high-throughput studies.

Andrea Ganna, Donghwan Lee, Erik Ingelsson, Yudi Pawitan

Briefings Bioinform., 2015

2014

Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data.

Chen Suo, Stefano Calza, Agus Salim, Yudi Pawitan

Bioinform., 2014

2013

Partial least squares and logistic regression random-effects estimates for gene selection in supervised classification of gene expression data.

Arief Gusnanto, Alexander Ploner, Farag Shuweihdi, Yudi Pawitan

J. Biomed. Informatics, 2013

2012

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks.

Andrey Alexeyenko, Woojoo Lee, Maria Pernemalm, Justin Guegan, Philippe Dessen, Vladimir Lazar, Janne Lehtiö, Yudi Pawitan

BMC Bioinform., 2012

Statistical challenges associated with detecting copy number variations with next-generation sequencing.

Teo Shu Mei, Yudi Pawitan, Ku Chee Seng, Kee Seng Chia, Agus Salim

Bioinform., 2012

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data.

Arief Gusnanto, Henry M. Wood, Yudi Pawitan, Pamela Rabbitts, Stefano Berri

Bioinform., 2012

2011

Multi-platform segmentation for joint detection of copy number variants.

Teo Shu Mei, Yudi Pawitan, Vikrant Kumar, Anbupalam Thalamuthu, Mark Seielstad, Kee Seng Chia, Agus Salim

Bioinform., 2011

2010

Identification of recurrent regions of copy-number variants across multiple individuals.

Teo Shu Mei, Agus Salim, Stefano Calza, Ku Chee Seng, Kee Seng Chia, Yudi Pawitan

BMC Bioinform., 2010

Super-sparse principal component analyses for high-throughput genomic data.

Donghwan Lee, Woojoo Lee, Youngjo Lee, Yudi Pawitan

BMC Bioinform., 2010

2009

Correlating gene and protein expression data using Correlated Factor Analysis.

Chuen Seng Tan, Agus Salim, Alexander Ploner, Janne Lehtiö, Kee Seng Chia, Yudi Pawitan

BMC Bioinform., 2009

2008

Normalization of oligonucleotide arrays based on the least-variant set of genes.

Stefano Calza, Davide Valentini, Yudi Pawitan

BMC Bioinform., 2008

Unequal group variances in microarray data analyses.

Meaza Demissie, Barbara Mascialino, Stefano Calza, Yudi Pawitan

Bioinform., 2008

2007

Detecting differential expression in microarray data: comparison of optimal procedures.

Elena Perelman, Alexander Ploner, Stefano Calza, Yudi Pawitan

BMC Bioinform., 2007

Robust smooth segmentation approach for array CGH data analysis.

Jian Huang, Arief Gusnanto, Kathleen O'Sullivan, Johan Staaf, Åke Borg, Yudi Pawitan

Bioinform., 2007

2006

Finding regions of significance in SELDI measurements for identifying protein biomarkers.

Chuen Seng Tan, Alexander Ploner, Andreas Quandt, Janne Lehtiö, Yudi Pawitan

Bioinform., 2006

Multidimensional local false discovery rate for microarray studies.

Alexander Ploner, Stefano Calza, Arief Gusnanto, Yudi Pawitan

Bioinform., 2006

Estimation of false discovery proportion under general dependence.

Yudi Pawitan, Stefano Calza, Alexander Ploner

Bioinform., 2006

2005

Non-Gaussian smoothing of low-count transmission scans for PET whole-body studies.

Yudi Pawitan, Valentino Bettinardi, M. Teras

IEEE Trans. Medical Imaging, 2005

Correlation test to assess low-level processing of high-density oligonucleotide microarray data.

Alexander Ploner, Lance D. Miller, Per Hall, Jonas Bergh, Yudi Pawitan

BMC Bioinform., 2005

Bias in the estimation of false discovery rate in microarray studies.

Yudi Pawitan, Karuturi R. Krishna Murthy, Stefan Michiels, Alexander Ploner

Bioinform., 2005

False discovery rate, sensitivity and sample size for microarray studies.

Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner

Bioinform., 2005

ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers.

Andreas Quandt, Alexander Ploner, Chuen Seng Tan, Janne Lehtiö, Yudi Pawitan

Proceedings of the Computational Life Sciences, First International Symposium, 2005

1993

Data-dependent bandwidth selection for emission computed tomography reconstruction.

Yudi Pawitan, Finbarr O'Sullivan

IEEE Trans. Medical Imaging, 1993

Reducing negativity artifacts in emission tomography: post-processing filtered backprojection solutions.

Finbarr O'Sullivan, Yudianto Pawitan, David R. Haynor

IEEE Trans. Medical Imaging, 1993