Krishna Rani Kalari

According to our database, Krishna Rani Kalari authored at least 12 papers between 2012 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

CRISP - Clustering-Based Redundancy-Reduced Instance Sampling for Pathology Case Representation and Retrieval.

Zahra Rahimi Afzal, Wataru Uegami, Saghir Alfasly, Saba Yasir, Judy C. Boughey, Matthew P. Goetz, Krishna Rani Kalari, Hamid R. Tizhoosh

CoRR, May, 2026

Validation of Whole-Slide Foundation Models for Image Retrieval in TCGA Data.

Tianhao Lei, Parsa Esmaeilkhani, Saghir Alfasly, Wataru Uegami, Judy C. Boughey, Matthew P. Goetz, Krishna Rani Kalari, Hamid R. Tizhoosh

CoRR, May, 2026

2024

Zero-Shot Whole Slide Image Retrieval in Histopathology Using Embeddings of Foundation Models.

Saghir Alfasly, Ghazal Alabtah, Sobhan Hemati, Krishna Rani Kalari, Hamid R. Tizhoosh

CoRR, 2024

A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology.

Sobhan Hemati, Krishna Rani Kalari, Hamid R. Tizhoosh

CoRR, 2024

2020

Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.

Wenjiang Deng, Tian Mou, Krishna Rani Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu

Bioinform., 2020

2019

Cell-level somatic mutation detection from single-cell RNA sequencing.

Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna Rani Kalari, Liewei Wang, Yudi Pawitan

Bioinform., 2019

2018

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.

Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna Rani Kalari

BMC Bioinform., 2018

Isoform-level gene expression patterns in single-cell RNA-sequencing data.

Trung-Nghia Vu, Quin F. Wills, Krishna Rani Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen

Bioinform., 2018

2016

Beta-Poisson model for single-cell RNA-seq data analyses.

Trung-Nghia Vu, Quin F. Wills, Krishna Rani Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan

Bioinform., 2016

Unsupervised single-cell analysis in triple-negative breast cancer: A case study.

Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna Rani Kalari, Richard M. Weinshilboum, Liewei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2014

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.

Krishna Rani Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher

BMC Bioinform., 2014

2012

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna Rani Kalari, Jean-Pierre A. Kocher

Bioinform., 2012