Yuriy Fofanov

According to our database, Yuriy Fofanov authored at least 19 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Identification of multivariable Boolean patterns in microbiome and microbial gene composition data.

George Golovko, Kamil Khanipov, Victor Reyes, Irina Pinchuk, Yuriy Fofanov

Biosyst., November, 2023

2019

Broom: application for non-redundant storage of high throughput sequencing data.

Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov

Bioinform., 2019

2018

Detection of multi-dimensional co-exclusion patterns in microbial communities.

Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov

Bioinform., 2018

2017

Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes.

Kamil Khanipov, Levent Albayrak, George Golovko, Maria Pimenova, Ioannis T. Pavlidis, Yuriy Fofanov, Khanipov K.

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis.

Levent L. Albayrak, Kamil Khanipov, Mark Rojas, George Golovko, Maria Pimenova, Michael Kosoy, Yuriy Fofanov

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2015

CoCo: An application to store High-Throughput Sequencing data in compact text and binary file formats.

Kamil Khanipov, Georgiy Golovko, Mark Rojas, Levent Albayrak, Otto Dobretsberger, Maria Pimenova, Nels Olson, Sergei Chumakov, Yuriy Fofanov

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2012

Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation.

Georgiy Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William Widger, Yuriy Fofanov

BMC Bioinform., 2012

2010

Co-Evolution of the Influenza Virus and Its Hosts.

Stephen Huff, Mark Rojas, Paul Havlak, Yuriy Fofanov

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.

Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov

Bioinform., 2009

2007

Effect of the mutation rate and background size on the quality of pathogen identification.

Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov

Bioinform., 2007

Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.

Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Developing Assays for the Detection of Influenza in Human Samples.

Chen Feng, Catherine Putonti, Michael Quance, Stephen Huff, Andrey Belokrylov, S. Lennart Johnsson, Krishna Jayaraman, Michael Hogan, Yuriy Fofanov

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

A parallel computing algorithm for 16S rRNA probe design.

Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox

J. Parallel Distributed Comput., 2006

Two Challenges in Genomics That Can Benefit from Petascale Platforms.

Catherine Putonti, Meizhuo Zhang, S. Lennart Johnsson, Yuriy Fofanov

Proceedings of the Euro-Par 2006 Workshops: Parallel Processing, 2006

2005

ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes.

Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox

Proceedings of The 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, 2005

2004

How independent are the appearances of n-mers in different genomes?

Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt

Bioinform., 2004

Analysis of Promoter Regions for Essential Genes of Bacillus subtilis for Using PIDA.

Catherine Putonti, Yuriy Fofanov

Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2004

Using Statistical Properties of Short Subsequences in Microbial Identification.

Sergei Chumakov, Catherine Putonti, B. Montgomery Pettitt, George E. Fox, Richard C. Willson, Yuriy Fofanov

Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2004

2002

Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach.

Yuriy Fofanov, B. Montgomery Pettitt

J. Biomed. Informatics, 2002