Viacheslav Fofanov

According to our database, Viacheslav Fofanov authored at least 11 papers between 2004 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites.

Tara N. Furstenau, Jill H. Cocking, Jason W. Sahl, Viacheslav Fofanov

BMC Bioinform., 2018

2010

Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.

Drew H. Bryant, Mark Moll, Brian Y. Chen, Viacheslav Fofanov, Lydia E. Kavraki

BMC Bioinform., 2010

2009

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.

Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov

Bioinform., 2009

2008

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.

David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge

BMC Bioinform., 2008

2007

The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.

Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki

J. Comput. Biol., 2007

Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.

Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki

J. Bioinform. Comput. Biol., 2007

Effect of the mutation rate and background size on the quality of pathogen identification.

Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov

Bioinform., 2007

Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.

Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.

Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki

Proceedings of the Research in Computational Molecular Biology, 2006

2005

Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.

Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki

Proceedings of the Biocomputing 2005, 2005

2004

How independent are the appearances of n-mers in different genomes?

Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt

Bioinform., 2004