Aaron M. Cohen
Orcid: 0000-0002-4610-9912
According to our database1,
Aaron M. Cohen
authored at least 49 papers
between 2004 and 2024.
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Bibliography
2024
Automatically pre-screening patients for the rare disease aromatic l-amino acid decarboxylase deficiency using knowledge engineering, natural language processing, and machine learning on a large EHR population.
J. Am. Medical Informatics Assoc., February, 2024
2020
Database J. Biol. Databases Curation, 2020
A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data.
Proceedings of the ACM WSDM 2020 Health Search and Data Mining Workshop, 2020
2019
Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings.
J. Biomed. Informatics, 2019
Towards augmenting structured EHR data: a comparison of manual chart review and patient self-report.
Proceedings of the AMIA 2019, 2019
2018
Design of a generic, open platform for machine learning-assisted indexing and clustering of articles in PubMed, a biomedical bibliographic database.
Data Inf. Manag., 2018
Database J. Biol. Databases Curation, 2018
OHSU CLEF 2018 Task 2 Diagnostic Test Accuracy Ranking using Publication Type Cluster Similarity Measures.
Proceedings of the Working Notes of CLEF 2018, 2018
2017
Call for Papers! Special Issue on Models of Discovery: Mining the Scientific Literature.
J. Data Inf. Sci., 2017
Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach.
J. Am. Medical Informatics Assoc., 2017
Proceedings of the AMIA 2017, 2017
2016
A Mixed Methods Task Analysis of the Implementation and Validation of EHR-Based Clinical Quality Measures.
Proceedings of the AMIA 2016, 2016
2015
Automated confidence ranked classification of randomized controlled trial articles: an aid to evidence-based medicine.
J. Am. Medical Informatics Assoc., 2015
2014
Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers.
Health Inf. Sci. Syst., 2014
Database J. Biol. Databases Curation, 2014
2013
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences.
Frontiers Neuroinformatics, 2013
A Large-Scale Analysis of the Reasons Given for Excluding Articles that are Retrieved by Literature Search During Systematic Review.
Proceedings of the AMIA 2013, 2013
Proceedings of the 2013 AAAI Fall Symposia, Arlington, Virginia, USA, November 15-17, 2013, 2013
2012
k-Information Gain Scaled Nearest Neighbors: A Novel Approach to Classifying Protein-Protein Interaction-Related Documents.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Studying the potential impact of automated document classification on scheduling a systematic review update.
BMC Medical Informatics Decis. Mak., 2012
Identifying Patients for Clinical Studies from Electronic Health Records: TREC 2012 Medical Records Track at OHSU.
Proceedings of The Twenty-First Text REtrieval Conference, 2012
Barriers to Retrieving Patient Information from Electronic Health Record Data: Failure Analysis from the TREC Medical Records Track.
Proceedings of the AMIA 2012, 2012
2011
Letter: Performance of support-vector-machine-based classification on 15 systematic review topics evaluated with the WSS@95 measure.
J. Am. Medical Informatics Assoc., 2011
Identifying Patients for Clinical Studies from Electronic Health Records: TREC Medical Records Track at OHSU.
Proceedings of The Twentieth Text REtrieval Conference, 2011
2010
Evidence-based medicine, the essential role of systematic reviews, and the need for automated text mining tools.
Proceedings of the ACM International Health Informatics Symposium, 2010
2009
Research Paper: Cross-Topic Learning for Work Prioritization in Systematic Review Creation and Update.
J. Am. Medical Informatics Assoc., 2009
Research Paper: A System for Classifying Disease Comorbidity Status from Medical Discharge Summaries Using Automated Hotspot and Negated Concept Detection.
J. Am. Medical Informatics Assoc., 2009
Tasks, topics and relevance judging for the TREC Genomics Track: five years of experience evaluating biomedical text information retrieval systems.
Inf. Retr., 2009
Evaluation of a gene information summarization system by users during the analysis process of microarray datasets.
BMC Bioinform., 2009
2008
Case Report: Five-way Smoking Status Classification Using Text Hot-Spot Identification and Error-correcting Output Codes.
J. Am. Medical Informatics Assoc., 2008
SYRIAC: The SYstematic Review Information Automated Collection System A Data Warehouse for Facilitating Automated Biomedical Text Classification.
Proceedings of the AMIA 2008, 2008
Optimizing Feature Representation for Automated Systematic Review Work Prioritization.
Proceedings of the AMIA 2008, 2008
Discovering Synergistic Qualities of Published Authors to Enhance Translational Research.
Proceedings of the AMIA 2008, 2008
2007
Proceedings of The Sixteenth Text REtrieval Conference, 2007
Proceedings of The Sixteenth Text REtrieval Conference, 2007
Automatic Summarization of Mouse Gene Information by Clustering and Sentence Extraction from MEDLINE Abstracts.
Proceedings of the AMIA 2007, 2007
A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task.
Proceedings of the AMIA 2007, 2007
2006
Research Paper: Reducing Workload in Systematic Review Preparation Using Automated Citation Classification.
J. Am. Medical Informatics Assoc., 2006
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Combining Lexicon Expansion, Information Retrieval, and Cluster-based Ranking for Biomedical Question Answering.
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Proceedings of the AMIA 2006, 2006
An Effective General Purpose Approach for Automated Biomedical Document Classification.
Proceedings of the AMIA 2006, 2006
2005
Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.
BMC Bioinform., 2005
Proceedings of the Fourteenth Text REtrieval Conference, 2005
A Comparison of Techniques for Classification and Ad Hoc Retrieval of Biomedical Documents.
Proceedings of the Fourteenth Text REtrieval Conference, 2005
2004
Int. J. Medical Informatics, 2004
Proceedings of the Thirteenth Text REtrieval Conference, 2004
Feature Generation, Feature Selection, Classifiers, and Conceptual Drift for Biomedical Document Triage.
Proceedings of the Thirteenth Text REtrieval Conference, 2004