Adam K. Sieradzan

According to our database, Adam K. Sieradzan authored at least 9 papers between 2015 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2023

Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins.

Adam K. Sieradzan, Jordi Sans-Duñó, Emilia A. Lubecka, Cezary Czaplewski, Agnieszka G. Lipska, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo

J. Comput. Chem., February, 2023

Long-time scale simulations of virus-like particles from three human-norovirus strains.

Agnieszka G. Lipska, Adam K. Sieradzan, Cezary Czaplewski, Andrea D. Lipinska, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo

J. Comput. Chem., 2023

2020

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.

Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski

J. Chem. Inf. Model., 2020

2018

High Performance Computing with Coarse Grained Model of Biological Macromolecules.

Emilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo

Supercomput. Front. Innov., 2018

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.

Cezary Czaplewski, Agnieszka S. Karczynska, Adam K. Sieradzan, Adam Liwo

Nucleic Acids Res., 2018

A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields.

Adam K. Sieradzan, Artur Gieldon, Yanping Yin, Yi He, Harold A. Scheraga, Adam Liwo

J. Comput. Chem., 2018

2017

Introduction of steered molecular dynamics into UNRES coarse-grained simulations package.

Adam K. Sieradzan, Rafal Jakubowski

J. Comput. Chem., 2017

2016

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.

Pawel Krupa, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska, Magdalena Slusarz, Rafal Slusarz, Artur Gieldon, Cezary Czaplewski, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo

Bioinform., 2016

2015

Introduction of periodic boundary conditions into UNRES force field.

Adam K. Sieradzan

J. Comput. Chem., 2015