Alan M. Moses

Orcid: 0000-0003-3118-3121

According to our database1, Alan M. Moses authored at least 26 papers between 2003 and 2022.

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Bibliography

2022
Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation.
PLoS Comput. Biol., September, 2022

Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning.
PLoS Comput. Biol., 2022

2021
CytoImageNet: A large-scale pretraining dataset for bioimage transfer learning.
CoRR, 2021

Random Embeddings and Linear Regression can Predict Protein Function.
CoRR, 2021

2020
Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning.
CoRR, 2020

W-Cell-Net: Multi-frame Interpolation of Cellular Microscopy Videos.
CoRR, 2020

2019
Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting.
PLoS Comput. Biol., 2019

Entropy and Information within Intrinsically Disordered Protein Regions.
Entropy, 2019

The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers.
CoRR, 2019

Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers.
Bioinform., 2019

YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells.
Bioinform., 2019

The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

2018
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity.
BMC Syst. Biol., 2018

NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals.
BMC Bioinform., 2018

2015
Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images.
Bioinform., 2015

2014
Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences.
PLoS Comput. Biol., 2014

2013
Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins.
PLoS Comput. Biol., 2013

2012
Towards a theoretical understanding of false positives in DNA motif finding.
BMC Bioinform., 2012

Predicting kinase substrates using conservation of local motif density.
Bioinform., 2012

2011
Modeling the evolution of a classic genetic switch.
BMC Syst. Biol., 2011

Ranking insertion, deletion and nonsense mutations based on their effect on genetic information.
BMC Bioinform., 2011

2009
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction.
BMC Bioinform., 2009

2006
Large-Scale Turnover of Functional Transcription Factor Binding Sites in <i>Drosophila</i>.
PLoS Comput. Biol., 2006

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
BMC Bioinform., 2006

2004
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures.
Proceedings of the Biocomputing 2004, 2004

2003
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003


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