John Parkinson

According to our database1, John Parkinson authored at least 25 papers between 1990 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2022
Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation.
PLoS Comput. Biol., September, 2022

2020
A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries.
PLoS Comput. Biol., 2020

2018
Improved enzyme annotation with EC-specific cutoffs using DETECT v2.
Bioinform., 2018

2016
PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya.
Database J. Biol. Databases Curation, 2016

2015
Hyperscape: visualization for complex biological networks.
Bioinform., 2015

2013
Identification of a Functional Connectome for Long-Term Fear Memory in Mice.
PLoS Comput. Biol., 2013

IDBA-MT: <i>De Novo</i> Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing Technology.
J. Comput. Biol., 2013

2012
Modelling the Self-Assembly of Elastomeric Proteins Provides Insights into the Evolution of Their Domain Architectures.
PLoS Comput. Biol., 2012

2011
DAnCER: Disease-Annotated Chromatin Epigenetics Resource.
Nucleic Acids Res., 2011

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.
Bioinform., 2011

2010
DETECT - a Density Estimation Tool for Enzyme ClassificaTion and its application to <i>Plasmodium falciparum</i>.
Bioinform., 2010

2009
The Modular Organization of Protein Interactions in <i>Escherichia coli</i>.
PLoS Comput. Biol., 2009

2008
Bacteriome.org - an integrated protein interaction database for <i>E. coli</i>.
Nucleic Acids Res., 2008

Pupils' attitudes towards school science as they transfer from an ICT-rich primary school to a secondary school with fewer ICT resources: Does ICT matter?
Educ. Inf. Technol., 2008

SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences.
Bioinform., 2008

2006
Cell++ - simulating biochemical pathways.
Bioinform., 2006

2005
PartiGeneDB - collating partial genomes.
Nucleic Acids Res., 2005

Exploring Parasite Gene Space.
BMC Bioinform., 2005

2004
NEMBASE: a resource for parasitic nematode ESTs.
Nucleic Acids Res., 2004

Mediating Science Learning Through Information and Communications Technology: Holliman, Richard and Scanlon, Eileen (Eds.) (2004) London: RoutledgeFalmer, 211pp, ISBN 0-415-32832-2.
Comput. Educ., 2004

PartiGene-constructing partial genomes.
Bioinform., 2004

2003
SimiTri-visualizing similarity relationships for groups of sequences.
Bioinform., 2003

2002
Making sense of EST sequences by CLOBBing them.
BMC Bioinform., 2002

1999
A model for the study and design of teaching situations with ICT.
Proceedings of the Communications and Networking in Education: Learning in a Networked Society, 1999

1990
Making CASE Work.
Proceedings of the Advanced Information Systems Engineering, 1990


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