Richard Durbin

Orcid: 0000-0002-9130-1006

Affiliations:
  • University of Cambridge, Department of Genetics, UK
  • Wellcome Sanger Institute, Cambridge, UK


According to our database1, Richard Durbin authored at least 75 papers between 1988 and 2023.

Collaborative distances:

Timeline

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Bibliography

2023
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
BMC Bioinform., December, 2023

YaHS: yet another Hi-C scaffolding tool.
Bioinform., January, 2023

2021
Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.
BMC Bioinform., December, 2021

Efficient iterative Hi-C scaffolder based on N-best neighbors.
BMC Bioinform., 2021

2020
Haplotype-aware graph indexes.
Bioinform., 2020

Identifying and removing haplotypic duplication in primary genome assemblies.
Bioinform., 2020

A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.
Bioinform., 2020

2019
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats.
J. Open Source Softw., 2019

Viral coinfection analysis using a MinHash toolkit.
BMC Bioinform., 2019

Crumble: reference free lossy compression of sequence quality values.
Bioinform., 2019

2018
A graph-based approach to diploid genome assembly.
Bioinform., 2018

2016
A genomic history of Aboriginal Australia.
Nat., 2016

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data.
Bioinform., 2016

2014
Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT).
Bioinform., 2014

2012
WormBase 2012: more genomes, more data, new website.
Nucleic Acids Res., 2012

Ensembl 2012.
Nucleic Acids Res., 2012

2011
Ensembl 2011.
Nucleic Acids Res., 2011

The variant call format and VCFtools.
Bioinform., 2011

2010
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies.
PLoS Comput. Biol., 2010

WormBase: a comprehensive resource for nematode research.
Nucleic Acids Res., 2010

Ensembl's 10th year.
Nucleic Acids Res., 2010

Copy number variant detection in inbred strains from short read sequence data.
Bioinform., 2010

Efficient construction of an assembly string graph using the FM-index.
Bioinform., 2010

Fast and accurate long-read alignment with Burrows-Wheeler transform.
Bioinform., 2010

2009
Ensembl 2009.
Nucleic Acids Res., 2009

The Sequence Alignment/Map format and SAMtools.
Bioinform., 2009

Fast and accurate short read alignment with Burrows-Wheeler transform.
Bioinform., 2009

2008
TreeFam: 2008 Update.
Nucleic Acids Res., 2008

WormBase 2007.
Nucleic Acids Res., 2008

Ensembl 2008.
Nucleic Acids Res., 2008

Accounting for Non-genetic Factors Improves the Power of eQTL Studies.
Proceedings of the Research in Computational Molecular Biology, 2008

2007
Ensembl 2007.
Nucleic Acids Res., 2007

WormBase: new content and better access.
Nucleic Acids Res., 2007

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
Bioinform., 2007

2006
WormBase: better software, richer content.
Nucleic Acids Res., 2006

TreeFam: a curated database of phylogenetic trees of animal gene families.
Nucleic Acids Res., 2006

Pfam: clans, web tools and services.
Nucleic Acids Res., 2006

Ensembl 2006.
Nucleic Acids Res., 2006

2005
InterPro, progress and status in 2005.
Nucleic Acids Res., 2005

Ensembl 2005.
Nucleic Acids Res., 2005

WormBase: a comprehensive data resource for <i>Caenorhabditis</i> biology and genomics.
Nucleic Acids Res., 2005

2004
WormBase: a multi-species resource for nematode biology and genomics.
Nucleic Acids Res., 2004

Ensembl 2004.
Nucleic Acids Res., 2004

The Pfam protein families database.
Nucleic Acids Res., 2004

Enhanced protein domain discovery using taxonomy.
BMC Bioinform., 2004

Improved techniques for the identification of pseudogenes.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

WormBase: a cross-species database for comparative genomics.
Nucleic Acids Res., 2003

Ensembl 2002: accommodating comparative genomics.
Nucleic Acids Res., 2003

A Table-Driven, Full-Sensitivity Similarity Search Algorithm.
J. Comput. Biol., 2003

2002
The Ensembl genome database project.
Nucleic Acids Res., 2002

The Pfam Protein Families Database.
Nucleic Acids Res., 2002

Comparative ab initio prediction of gene structures using pair HMMs.
Bioinform., 2002

QuickTree: building huge Neighbour-Joining trees of protein sequences.
Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002

Invited Lecture - Accelerating Smith-Waterman Searches.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

2001
WormBase: network access to the genome and biology of Caenorhabditis elegans.
Nucleic Acids Res., 2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

Interpreting the Human Genome Sequence, Using Stochastic Grammars.
Proceedings of the Association for Computational Linguistic, 2001

2000
The Pfam Protein Families Database.
Nucleic Acids Res., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

1999
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Nucleic Acids Res., 1999

1998
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Nucleic Acids Res., 1998

Dynamic Programming Alignment Accuracy.
J. Comput. Biol., 1998

Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Cambridge University Press, ISBN: 9780511790492, 1998

1997
Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1995
Method for Calculation of Probability of Matching a Bounded Regular Expression in a Random Data String.
J. Comput. Biol., 1995

Maximum Discrimination Hidden Markov Models of Sequence Consensus.
J. Comput. Biol., 1995

1994
A workbench for large-scale sequence homology analysis.
Comput. Appl. Biosci., 1994

An Expert System for Processing Sequence Homology Data.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

1989
An Analysis of the Elastic Net Approach to the Traveling Salesman Problem.
Neural Comput., 1989

Product Units: A Computationally Powerful and Biologically Plausible Extension to Backpropagation Networks.
Neural Comput., 1989

Image analysis of restriction enzyme fingerprint autoradiograms.
Comput. Appl. Biosci., 1989

Product Units with Trainable Exponents and Multi-Layer Networks.
Proceedings of the Neurocomputing - Algorithms, Architectures and Applications, Proceedings of the NATO Advanced Research Workshop on Neurocomputing Algorithms, Architectures and Applications, Les Arcs, France, February 27, 1989

1988
Software for genome mapping by fingerprinting techniques.
Comput. Appl. Biosci., 1988


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