Alexandre G. de Brevern

According to our database, Alexandre G. de Brevern authored at least 30 papers between 2000 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Shaking the β-Bulges.

Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

SWORD2: hierarchical analysis of protein 3D structures.

Gabriel Cretin, Tatiana Galochkina, Yann Vander Meersche, Alexandre G. de Brevern, Guillaume Postic, Jean-Christophe Gelly

Nucleic Acids Res., 2022

2019

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.

Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern

Source Code Biol. Medicine, 2019

Benchmarking the PEPOP methods for mimicking discontinuous epitopes.

Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau

BMC Bioinform., 2019

PEPOP 2.0: new approaches to mimic non-continuous epitopes.

Vincent Demolombe, Alexandre G. de Brevern, Liza Figueredo Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau

BMC Bioinform., 2019

2018

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.

Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan

PLoS Comput. Biol., 2018

2015

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.

Yassine Ghouzam, Guillaume Postic, Alexandre G. de Brevern, Jean-Christophe Gelly

Bioinform., 2015

2014

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins.

Pierrick Craveur, Joseph Rebehmed, Alexandre G. de Brevern

Database J. Biol. Databases Curation, 2014

PolyprOnline: polyproline helix II and secondary structure assignment database.

Romain Chebrek, Sylvain Léonard, Alexandre G. de Brevern, Jean-Christophe Gelly

Database J. Biol. Databases Curation, 2014

2013

VLDP web server: a powerful geometric tool for analysing protein structures in their environment.

Jeremy Esque, Sylvain Léonard, Alexandre G. de Brevern, Christophe Oguey

Nucleic Acids Res., 2013

DoSA: Database of Structural Alignments.

Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan

Database J. Biol. Databases Curation, 2013

2012

PredyFlexy: flexibility and local structure prediction from sequence.

Alexandre G. de Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly

Nucleic Acids Res., 2012

2011

iPBA: a tool for protein structure comparison using sequence alignment strategies.

Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern

Nucleic Acids Res., 2011

Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts.

Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern

J. Chem. Inf. Model., 2011

Protein Peeling 3D: new tools for analyzing protein structures.

Jean-Christophe Gelly, Alexandre G. de Brevern

Bioinform., 2011

2010

A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation.

Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern

J. Chem. Inf. Model., 2010

Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site.

Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud

J. Cheminformatics, 2010

2009

Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site.

Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud

J. Comput. Aided Mol. Des., 2009

Protein short loop prediction in terms of a structural alphabet.

Manoj Tyagi, Aurélie Bornot, Bernard O. Offmann, Alexandre G. de Brevern

Comput. Biol. Chem., 2009

2006

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.

Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann

Nucleic Acids Res., 2006

Protein Peeling 2: a web server to convert protein structures into series of protein units.

Jean-Christophe Gelly, Catherine Etchebest, Serge A. Hazout, Alexandre G. de Brevern

Nucleic Acids Res., 2006

'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.

Jean-Christophe Gelly, Alexandre G. de Brevern, Serge A. Hazout

Bioinform., 2006

2005

New assessment of a structural alphabet.

Alexandre G. de Brevern

Silico Biol., 2005

2004

Local backbone structure prediction of proteins.

Alexandre G. de Brevern, Cristina Benros, Romain Gautier, Hélène Valadié, Serge A. Hazout, Catherine Etchebest

Silico Biol., 2004

Use of a structural alphabet for analysis of short loops connecting repetitive structures.

Laurent Fourrier, Cristina Benros, Alexandre G. de Brevern

BMC Bioinform., 2004

Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.

Alexandre G. de Brevern, Serge A. Hazout, Alain Malpertuy

BMC Bioinform., 2004

2003

'Hybrid Protein Model' for optimally defining 3D protein structure fragments.

Alexandre G. de Brevern, Serge A. Hazout

Bioinform., 2003

Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training.

Cristina Benros, Alexandre G. de Brevern, Serge A. Hazout

Proceedings of the NNSP 2003, 2003

2002

Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres.

Alexandre G. de Brevern, France Loirat, Anne Badel-Chagnon, Cécile André, Pierre Vincens, Serge A. Hazout

Comput. Chem., 2002

2000

Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties.

Alexandre G. de Brevern, Serge A. Hazout

Proceedings of the Seventh International Symposium on String Processing and Information Retrieval, 2000