Alexandre G. de Brevern

According to our database1, Alexandre G. de Brevern authored at least 28 papers between 2000 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:



iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.
Source Code Biol. Medicine, 2019

Benchmarking the PEPOP methods for mimicking discontinuous epitopes.
BMC Bioinform., 2019

PEPOP 2.0: new approaches to mimic non-continuous epitopes.
BMC Bioinform., 2019

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.
PLoS Comput. Biol., 2018

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.
Bioinform., 2015

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins.
Database J. Biol. Databases Curation, 2014

PolyprOnline: polyproline helix II and secondary structure assignment database.
Database J. Biol. Databases Curation, 2014

VLDP web server: a powerful geometric tool for analysing protein structures in their environment.
Nucleic Acids Res., 2013

DoSA: Database of Structural Alignments.
Database J. Biol. Databases Curation, 2013

PredyFlexy: flexibility and local structure prediction from sequence.
Nucleic Acids Res., 2012

iPBA: a tool for protein structure comparison using sequence alignment strategies.
Nucleic Acids Res., 2011

Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts.
J. Chem. Inf. Model., 2011

Protein Peeling 3D: new tools for analyzing protein structures.
Bioinform., 2011

A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation.
J. Chem. Inf. Model., 2010

Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site.
J. Cheminformatics, 2010

Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site.
J. Comput. Aided Mol. Des., 2009

Protein short loop prediction in terms of a structural alphabet.
Comput. Biol. Chem., 2009

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.
Nucleic Acids Res., 2006

Protein Peeling 2: a web server to convert protein structures into series of protein units.
Nucleic Acids Res., 2006

'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.
Bioinform., 2006

New assessment of a structural alphabet.
Silico Biol., 2005

Local backbone structure prediction of proteins.
Silico Biol., 2004

Use of a structural alphabet for analysis of short loops connecting repetitive structures.
BMC Bioinform., 2004

Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.
BMC Bioinform., 2004

'Hybrid Protein Model' for optimally defining 3D protein structure fragments.
Bioinform., 2003

Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training.
Proceedings of the NNSP 2003, 2003

Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres.
Comput. Chem., 2002

Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties.
Proceedings of the Seventh International Symposium on String Processing and Information Retrieval, 2000