Amanda Clare

According to our database, Amanda Clare authored at least 41 papers between 2000 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A visualization tool to explore alphabet orderings for the Burrows-Wheeler Transform.

Lily Major, Dave Davies, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Christine Zarges

CoRR, 2024

Heuristics for the Run-length Encoded Burrows-Wheeler Transform Alphabet Ordering Problem.

Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Christine Zarges

CoRR, 2024

2022

No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study.

Nicholas J. Dimonaco, Wayne Aubrey, Kim Kenobi, Amanda Clare, Christopher J. Creevey

Bioinform., 2022

2021

CD2CR: Co-reference Resolution Across Documents and Domains.

James Ravenscroft, Arie Cattan, Amanda Clare, Ido Dagan, Maria Liakata

CoRR, 2021

On the complexity of haplotyping a microbial community.

Samuel M. Nicholls, Wayne Aubrey, Kurt De Grave, Leander Schietgat, Christopher J. Creevey, Amanda Clare

Bioinform., 2021

CD\^2CR: Co-reference resolution across documents and domains.

James Ravenscroft, Amanda Clare, Arie Cattan, Ido Dagan, Maria Liakata

Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume, 2021

2020

Measuring prominence of scientific work in online news as a proxy for impact.

James Ravenscroft, Amanda Clare, Maria Liakata

CoRR, 2020

Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations.

Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Leonel Jose Peña Gamboa, Christine Zarges

Proceedings of the Parallel Problem Solving from Nature - PPSN XVI, 2020

2019

Enhanced string factoring from alphabet orderings.

Amanda Clare, Jacqueline W. Daykin

Inf. Process. Lett., 2019

Evolutionary search techniques for the Lyndon factorization of biosequences.

Amanda Clare, Jacqueline W. Daykin, Thomas Mills, Christine Zarges

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

2018

HarriGT: A Tool for Linking News to Science.

James Ravenscroft, Amanda Clare, Maria Liakata

Proceedings of ACL 2018, Melbourne, Australia, July 15-20, 2018, System Demonstrations, 2018

2017

Replicating complex agent based models, a formidable task.

Elizabeth Donkin, Peter Dennis, Andrey Ustalakov, John Warren, Amanda Clare

Environ. Model. Softw., 2017

2016

Rhetorical Classification of Anchor Text for Citation Recommendation.

Daniel Duma, Ewan Klein, Maria Liakata, James Ravenscroft, Amanda Clare

D Lib Mag., 2016

Goldilocks: a tool for identifying genomic regions that are 'just right'.

Samuel M. Nicholls, Amanda Clare, Joshua C. Randall

Bioinform., 2016

Applying Core Scientific Concepts to Context-Based Citation Recommendation.

Daniel Duma, Maria Liakata, Amanda Clare, James Ravenscroft, Ewan Klein

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

2015

<i>Review of "A functional start to computing with Python"</i>, Ted Herman, CRC Press, 2014, ISBN 978-1-4665-0455-4.

Amanda Clare

J. Funct. Program., 2015

Automatically Geotagging Articles in the Welsh Newspapers Online Collection.

Sean Sapstead, Illtud Daniel, Amanda Clare

Proceedings of the Research and Development in Intelligent Systems XXXII, 2015

2013

Partridge: An Effective System for the Automatic Cassification of the Types of Academic Papers.

James Ravenscroft, Maria Liakata, Amanda Clare

Proceedings of the Research and Development in Intelligent Systems XXX, 2013

2012

AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratory.

Andrew Sparkes, Amanda Clare

Bioinform., 2012

2011

Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications.

Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann

Proceedings of the 1st Workshop on Semantic Publishing 2011, 2011

2010

Inductive Queries for a Drug Designing Robot Scientist.

Ross D. King, Amanda C. Schierz, Amanda Clare, Jem J. Rowland, Andrew Sparkes, Siegfried Nijssen, Jan Ramon

Proceedings of the Inductive Databases and Constraint-Based Data Mining., 2010

2009

The Robot Scientist Adam.

Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir

Computer, 2009

2008

The EXACT description of biomedical protocols.

Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Locational distribution of gene functional classes in <i>Arabidopsis thaliana</i>.

Michael C. Riley, Amanda Clare, Ross D. King

BMC Bioinform., 2007

Logic and the Automatic Acquisition of Scientific Knowledge: An Application to Functional Genomics.

Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe

Proceedings of the Computational Discovery of Scientific Knowledge, 2007

2006

Functional bioinformatics for <i>Arabidopsis thaliana</i>.

Amanda Clare, Andreas Karwath, Helen Ougham, Ross D. King

Bioinform., 2006

Decision Trees for Hierarchical Multilabel Classification: A Case Study in Functional Genomics.

Hendrik Blockeel, Leander Schietgat, Jan Struyf, Saso Dzeroski, Amanda Clare

Proceedings of the Knowledge Discovery in Databases: PKDD 2006, 2006

An ontology for a Robot Scientist.

Larisa N. Soldatova, Amanda Clare, Andrew Sparkes, Ross D. King

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

Hierarchical Multi-classification with Predictive Clustering Trees in Functional Genomics.

Jan Struyf, Saso Dzeroski, Hendrik Blockeel, Amanda Clare

Proceedings of the Progress in Artificial Intelligence, 2005

The Robot Scientist Project.

Ross D. King, Michael Young, Amanda Clare, Kenneth Whelan, Jem J. Rowland

Proceedings of the Discovery Science, 8th International Conference, 2005

Integration of Genomic and Phenotypic Data.

Amanda Clare

Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

2004

Confirmation of data mining based predictions of protein function.

Ross D. King, Paul H. Wise, Amanda Clare

Bioinform., 2004

Scalable Multi-Relational Association Mining.

Amanda Clare, Hugh E. Williams, Nicholas Lester

Proceedings of the 4th IEEE International Conference on Data Mining (ICDM 2004), 2004

2003

Data Mining the Yeast Genome in a Lazy Functional Language.

Amanda Clare, Ross D. King

Proceedings of the Practical Aspects of Declarative Languages, 5th International Symposium, 2003

Predicting gene function in Saccharomyces cerevisiae.

Amanda Clare, Ross D. King

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

How well do we understand the clusters found in microarray data?

Amanda Clare, Ross D. King

Silico Biol., 2002

Machine learning of functional class from phenotype data.

Amanda Clare, Ross D. King

Bioinform., 2002

2001

A natural language system for retrieval of captioned images.

David Elworthy, Tony Rose, Amanda Clare, Aaron C. W. Kotcheff

Nat. Lang. Eng., 2001

The utility of different representations of protein sequence for predicting functional class.

Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe

Bioinform., 2001

Knowledge Discovery in Multi-label Phenotype Data.

Amanda Clare, Ross D. King

Proceedings of the Principles of Data Mining and Knowledge Discovery, 2001

2000

Genome scale prediction of protein functional class from sequence using data mining.

Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe

Proceedings of the sixth ACM SIGKDD international conference on Knowledge discovery and data mining, 2000