Dietrich Rebholz-Schuhmann

According to our database1, Dietrich Rebholz-Schuhmann authored at least 119 papers between 1998 and 2019.

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Bibliography

2019
Predicting knee osteoarthritis severity: comparative modeling based on patient's data and plain X-ray images.
CoRR, 2019

Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach.
BMC Bioinformatics, 2019

Unsupervised Classification of Health Content on Reddit.
Proceedings of the 9th International Conference on Digital Public Health, 2019

Ranked MSD: A New Feature Ranking and Feature Selection Approach for Biomarker Identification.
Proceedings of the Machine Learning and Knowledge Extraction, 2019

2018
Recurrent Deep Embedding Networks for Genotype Clustering and Ethnicity Prediction.
CoRR, 2018

Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns.
J. Biomedical Semantics, 2018

Improving data workflow systems with cloud services and use of open data for bioinformatics research.
Briefings in Bioinformatics, 2018

Extending LargeRDFBench for Multi-Source Data at Scale for SPARQL Endpoint Federation.
Proceedings of the Emerging Topics in Semantic Technologies, 2018

Deep Convolution Neural Network Model to Predict Relapse in Breast Cancer.
Proceedings of the 17th IEEE International Conference on Machine Learning and Applications, 2018

Assessing FAIR Data Principles Against the 5-Star Open Data Principles.
Proceedings of the Semantic Web: ESWC 2018 Satellite Events, 2018

Using Machine Learning to Distinguish Infected from Non-infected Subjects at an Early Stage Based on Viral Inoculation.
Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018

Linked Data Based Multi-omics Integration and Visualization for Cancer Decision Networks.
Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018

FedS: Towards Traversing Federated RDF Graphs.
Proceedings of the Big Data Analytics and Knowledge Discovery, 2018

A 2-Layered Graph Based Diffusion Approach for Altmetric Analysis.
Proceedings of the IEEE/ACM 2018 International Conference on Advances in Social Networks Analysis and Mining, 2018

2017
SAFE: SPARQL Federation over RDF Data Cubes with Access Control.
J. Biomedical Semantics, 2017

Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data.
J. Biomedical Semantics, 2017

BioFed: federated query processing over life sciences linked open data.
J. Biomedical Semantics, 2017

A Deep Learning Approach to Genomics Data for Population Scale Clustering and Ethnicity Prediction.
Proceedings of the Workshop on Semantic Web Solutions for Large-scale Biomedical Data Analytics co-located with 14th Extended Semantic Web Conference, 2017

Federated Query Formulation and Processing through BioFed.
Proceedings of the Workshop on Semantic Web Solutions for Large-scale Biomedical Data Analytics co-located with 14th Extended Semantic Web Conference, 2017

Biomedical Semantic Resources for Drug Discovery Platforms.
Proceedings of the Semantic Web: ESWC 2017 Satellite Events - ESWC 2017 Satellite Events, Portorož, Slovenia, May 28, 2017

Quantifying the Content of Biomedical Semantic Resources as a Core for Drug Discovery Platforms.
Proceedings of the Workshop on Semantic Web Solutions for Large-scale Biomedical Data Analytics co-located with 14th Extended Semantic Web Conference, 2017

Querying web polystores.
Proceedings of the 2017 IEEE International Conference on Big Data, BigData 2017, 2017

2016
The digital revolution in phenotyping.
Briefings in Bioinformatics, 2016

Drug Dosage Balancing Using Large Scale Multi-omics Datasets.
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2016

PrEVIEw: Clustering and Visualising PubMed using Visual Interface.
Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 15th International Semantic Web Conference, 2016

2015
A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC.
JAMIA, 2015

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.
Database, 2015

The semantic web in translational medicine: current applications and future directions.
Briefings in Bioinformatics, 2015

Linked Functional Annotation For Differentially Expressed Gene (DEG) Demonstrated using Illumina Body Map 2.0.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014
Thematic series on biomedical ontologies in JBMS: challenges and new directions.
J. Biomedical Semantics, 2014

The functional therapeutic chemical classification system.
Bioinformatics, 2014

Biological network extraction from scientific literature: state of the art and challenges.
Briefings in Bioinformatics, 2014

Collaboratively Annotating Multilingual Parallel Corpora in the Biomedical Domain―some MANTRAs.
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

2013
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.
J. Biomedical Semantics, 2013

Monitoring named entity recognition: the League Table.
J. Biomedical Semantics, 2013

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.
J. Biomedical Semantics, 2013

Brain: biomedical knowledge manipulation.
Bioinformatics, 2013

PCorral - interactive mining of protein interactions from MEDLINE.
Database, 2013

Literature Mining Solutions for Life Science Research.
Adv. Bioinformatics, 2013

Brain, a Library for the OWL2 EL profile.
Proceedings of the 10th International Workshop on OWL: Experiences and Directions (OWLED 2013) co-located with 10th Extended Semantic Web Conference (ESWC 2013), 2013

Connections across Scientific Publications based on Semantic Annotations.
Proceedings of the 3rd Workshop on Semantic Publishing, 2013

A Discourse-Driven Content Model for Summarising Scientific Articles Evaluated in a Complex Question Answering Task.
Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing, 2013

Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

An Overview of Terminological Resources available for French bioNLP.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

An Evaluation of the Concept Retrieval Annotation for Spanish-English CLEFER Parallel Corpora.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Context-Dependent Semantic Annotation in Cross-Lingual Biomedical Resources.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

Creating Multilingual Gold Standard Corpora for Biomedical Concept Recognition.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Exploiting BabelNet for Multilingual Biomedical Synonym Expansion.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

GRO Task: Populating the Gene Regulation Ontology with events and relations.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
Poseidon: An information retrieval and extraction system for metagenomic marine science.
Ecological Informatics, 2012

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.
J. Biomedical Semantics, 2012

Automatic recognition of conceptualization zones in scientific articles and two life science applications.
Bioinformatics, 2012

Harmonization of gene/protein annotations: towards a gold standard MEDLINE.
Bioinformatics, 2012

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Centroids: Gold standards with distributional variation.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

CALBC: Releasing the Final Corpora.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts.
Proceedings of the COLING 2012, 2012

Finding small molecule and protein pairs in scientific literature using a bootstrapping method.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011
UKPMC: a full text article resource for the life sciences.
Nucleic Acids Research, 2011

The BioLexicon: a large-scale terminological resource for biomedical text mining.
BMC Bioinformatics, 2011

Towards mature use of semantic resources for biomedical analyses.
J. Biomedical Semantics, 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomedical Semantics, 2011

Improving the extraction of complex regulatory events from scientific text by using ontology-based inference.
J. Biomedical Semantics, 2011

Ontology design patterns to disambiguate relations between genes and gene products in GENIA.
J. Biomedical Semantics, 2011

A common layer of interoperability for biomedical ontologies based on OWL EL.
Bioinformatics, 2011

Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications.
Proceedings of the 1st Workshop on Semantic Publishing 2011, 2011

Exploitation of Cross-References between Terminological Resources within the CALBC Context.
Proceedings of the 2011 Database and Expert Systems Applications, 2011

2010
Measuring prediction capacity of individual verbs for the identification of protein interactions.
Journal of Biomedical Informatics, 2010

Calbc Silver Standard Corpus.
J. Bioinformatics and Computational Biology, 2010

Wrestling with Biomedical Research Results: Language Resources and Literature Analysis.
J. Bioinformatics and Computational Biology, 2010

Ontology refinement for improved information retrieval.
Inf. Process. Manage., 2010

First steps in the logic-based assessment of post-composed phenotypic descriptions
CoRR, 2010

The CALBC RDF Triple Store: retrieval over large literature content
CoRR, 2010

Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach.
BMC Bioinformatics, 2010

Relations as patterns: bridging the gap between OBO and OWL.
BMC Bioinformatics, 2010

Biomedical Semantics: the Hub for Biomedical Research 2.0.
J. Biomedical Semantics, 2010

PaperMaker: validation of biomedical scientific publications.
Bioinformatics, 2010

Interoperability between phenotype and anatomy ontologies.
Bioinformatics, 2010


Applying ontology design patterns to the implementation of relations in GENIA.
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

Relational Patterns in OWL and Their Application to OBO.
Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010

The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.
Proceedings of the International Conference on Language Resources and Evaluation, 2010

2009
Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.
BMC Bioinformatics, 2009

Reuse of terminological resources for efficient ontological engineering in Life Sciences.
BMC Bioinformatics, 2009

Between proteins and phenotypes: annotation and interpretation of mutations.
BMC Bioinformatics, 2009

Response to comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'.
Bioinformatics, 2009

MeSH Up: effective MeSH text classification for improved document retrieval.
Bioinformatics, 2009

Identification of Chemical Entities in Patent Documents.
Proceedings of the Distributed Computing, 2009

Support tools for literature-based information access in molecular biology.
Proceedings of the 3rd International Universal Communication Symposium, 2009

How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions.
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Using Biomedical Terminological Resources for Information Retrieval.
Proceedings of the Information Retrieval in Biomedicine, 2009

2008
Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text.
EURASIP J. Bioinformatics and Systems Biology, 2008

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.
BMC Bioinformatics, 2008

Assessment of disease named entity recognition on a corpus of annotated sentences.
BMC Bioinformatics, 2008

Integrating protein-protein interactions and text mining for protein function prediction.
BMC Bioinformatics, 2008

Text processing through Web services: calling Whatizit.
Bioinformatics, 2008

MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline.
Bioinformatics, 2008

Categorization of services for seeking information in biomedical literature: a typology for improvement of practice.
Briefings in Bioinformatics, 2008

Use of Shared Lexical Resources for Efficient Ontological Engineering.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

Towards Knowledge in the Cloud.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2008 Workshops, 2008

Gene Regulation Ontology (GRO): Design Principles and Use Cases.
Proceedings of the eHealth Beyond the Horizon, 2008

08131 Executive Summary -- Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives.
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008

2007
Medical Informatics and Bioinformatics: A Bibliometric Study.
IEEE Trans. Information Technology in Biomedicine, 2007

Using argumentation to extract key sentences from biomedical abstracts.
I. J. Medical Informatics, 2007

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics.
BMC Bioinformatics, 2007

EBIMed - text crunching to gather facts for proteins from Medline.
Bioinformatics, 2007

2006
Distributed modules for text annotation and IE applied to the biomedical domain.
I. J. Medical Informatics, 2006

Dealing with repetitions in sequencing by hybridization.
Computational Biology and Chemistry, 2006

Collecting a Large Corpus from all of Medline.
Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, 2006

Annotation and Disambiguation of Semantic Types in Biomedical Text: A Cascaded Approach to Named Entity Recognition.
Proceedings of the 5th Workshop on NLP and XML: Multi-Dimensional Markup in Natural Language Processing, 2006

2005
Resolving abbreviations to their senses in Medline.
Bioinformatics, 2005

Extracting Key Sentences with Latent Argumentative Structuring.
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

2004
Distributed Modules for Text Annotation and IE Applied to the Biomedical Domain.
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004

1999
Physicians in virtual environments multimodal human-computer interaction.
Interacting with Computers, 1999

1998
Automatic segmentation of the bronchial tract from spiral CT data for virtual reality representation.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

Course tracking and contour extraction of retinal vessels from color fundus photographs: most efficient use of steerable filters for model-based image analysis.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

Einsatz von steuerbaren Filtern zur modellbasierten Segmentation von Fundusphotographien.
Proceedings of the Bildverarbeitung für die Medizin: Algorithmen, 1998


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