Anika Oellrich

According to our database, Anika Oellrich authored at least 30 papers between 2010 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2017

Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease.

Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson

Database J. Biol. Databases Curation, 2017

The psycho-env corpus: research articles annotated for knowledge discovery on correlating mental diseases and environmental factors.

Hui Wang, Quan Sun, Anika Oellrich, Honghan Wu, Richard J. B. Dobson

Proceedings of the 2nd International Workshop on Knowledge Discovery in Healthcare Data Co-located with the 26th International Joint Conference on Artificial Intelligence (IJCAI 2017), 2017

2016

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.

Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah

J. Biomed. Semant., 2016

Reporting phenotypes in mouse models when considering body size as a potential confounder.

Anika Oellrich, Terrence F. Meehan, Helen E. Parkinson, Sirarat Sarntivijai, Jacqueline K. White, Natasha A. Karp

J. Biomed. Semant., 2016

The digital revolution in phenotyping.

Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier

Briefings Bioinform., 2016

Challenges and opportunities for system biology standards and tools in medical research.

Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer

Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records.

George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean, Maria Liakata, Rina Dutta

Proceedings of the 3rd Workshop on Computational Linguistics and Clinical Psychology: From Linguistic Signal to Clinical Reality, 2016

The language of mental health problems in social media.

George Gkotsis, Anika Oellrich, Tim J. P. Hubbard, Richard J. B. Dobson, Maria Liakata, Sumithra Velupillai, Rina Dutta

Proceedings of the 3rd Workshop on Computational Linguistics and Clinical Psychology: From Linguistic Signal to Clinical Reality, 2016

Multi-label Annotation in Scientific Articles - The Multi-label Cancer Risk Assessment Corpus.

James Ravenscroft, Anika Oellrich, Shyamasree Saha, Maria Liakata

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

2015

Special issue on bio-ontologies and phenotypes.

Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah

J. Biomed. Semant., 2015

Linking gene expression to phenotypes via pathway information.

Irene Papatheodorou, Anika Oellrich, Damian Smedley

J. Biomed. Semant., 2015

Concept selection for phenotypes and diseases using learn to rank.

Nigel Collier, Anika Oellrich, Tudor Groza

J. Biomed. Semant., 2015

Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora.

Tudor Groza, Sebastian Köhler, Sandra C. Doelken, Nigel Collier, Anika Oellrich, Damian Smedley, Francisco M. Couto, Gareth Baynam, Andreas Zankl, Peter N. Robinson

Database J. Biol. Databases Curation, 2015

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.

Nigel Collier, Tudor Groza, Damian Smedley, Peter N. Robinson, Anika Oellrich, Dietrich Rebholz-Schuhmann

Database J. Biol. Databases Curation, 2015

2014

The influence of disease categories on gene candidate predictions from model organism phenotypes.

Anika Oellrich, Sebastian Köhler, Nicole L. Washington, Chris Mungall, Suzanna Lewis, Melissa A. Haendel, Peter N. Robinson, Damian Smedley

J. Biomed. Semant., 2014

Using association rule mining to determine promising secondary phenotyping hypotheses.

Anika Oellrich, Julius O. B. Jacobsen, Irene Papatheodorou, Damian Smedley

Bioinform., 2014

Linking tissues to phenotypes using gene expression profiles.

Anika Oellrich, Damian Smedley

Database J. Biol. Databases Curation, 2014

2013

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.

Anika Oellrich, Christoph Grabmüller, Dietrich Rebholz-Schuhmann

J. Biomed. Semant., 2013

PhenoDigm: analyzing curated annotations to associate animal models with human diseases.

Damian Smedley, Anika Oellrich, Sebastian Köhler, Barbara J. Ruef, Monte Westerfield, Peter N. Robinson, Suzanna Lewis, Christopher J. Mungall

Database J. Biol. Databases Curation, 2013

Using silver and semi-gold standard corpora to compare open named entity recognisers.

Tudor Groza, Anika Oellrich, Nigel Collier

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.

Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann

J. Biomed. Semant., 2012

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing.

Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts.

Nigel Collier, Mai-Vu Tran, Hoang-Quynh Le, Anika Oellrich, Ai Kawazoe, Martin Hall-May, Dietrich Rebholz-Schuhmann

Proceedings of the COLING 2012, 2012

2011

Ontology design patterns to disambiguate relations between genes and gene products in GENIA.

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann

J. Biomed. Semant., 2011

A common layer of interoperability for biomedical ontologies based on OWL EL.

Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos

Bioinform., 2011

Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications.

Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann

Proceedings of the 1st Workshop on Semantic Publishing 2011, 2011

2010

Relations as patterns: bridging the gap between OBO and OWL.

Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre

BMC Bioinform., 2010

Interoperability between phenotype and anatomy ontologies.

Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann

Bioinform., 2010

Applying ontology design patterns to the implementation of relations in GENIA.

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann

Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

Relational Patterns in OWL and Their Application to OBO.

Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann

Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010