Andrea Bernini

According to our database, Andrea Bernini authored at least 11 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Community Membership Hiding as Counterfactual Graph Search via Deep Reinforcement Learning.

Andrea Bernini, Fabrizio Silvestri, Gabriele Tolomei

CoRR, 2023

Contrastive Learning with 3D Shapes.

Andrea Bernini

Proceedings of the First Tiny Papers Track at ICLR 2023, 2023

2021

Machine learning application for patient stratification and phenotype/genotype investigation in a rare disease.

Ottavia Spiga, Vittoria Cicaloni, Giovanna Maria Dimitri, Francesco Pettini, Daniela Braconi, Andrea Bernini, Annalisa Santucci

Briefings Bioinform., 2021

2020

AKUImg: A database of cartilage images of Alkaptonuria patients.

Alberto Rossi, Giorgia Giacomini, Vittoria Cicaloni, Silvia Galderisi, Maria Serena Milella, Andrea Bernini, Lia Millucci, Ottavia Spiga, Monica Bianchini, Annalisa Santucci

Comput. Biol. Medicine, 2020

Transient pockets as mediators of gas molecules routes inside proteins: The case study of dioxygen pathway in homogentisate 1, 2-dioxygenase and its implication in Alkaptonuria development.

Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Chukwudi Onyekachi Amarabom, Annalisa Santucci

Comput. Biol. Chem., 2020

2018

Process calculi for biological processes.

Andrea Bernini, Linda Brodo, Pierpaolo Degano, Moreno Falaschi, Diana Hermith

Nat. Comput., 2018

A new integrated and interactive tool applicable to inborn errors of metabolism: Application to alkaptonuria.

Ottavia Spiga, Vittoria Cicaloni, Andrea Zatkova, Lia Millucci, Giulia Bernardini, Andrea Bernini, Barbara Marzocchi, Monica Bianchini, Andrea Zugarini, Alberto Rossi, Matteo Zazzeri, Alfonso Trezza, Bruno Frediani, Lakshminarayan Ranganath, Daniela Braconi, Annalisa Santucci

Comput. Biol. Medicine, 2018

2017

ApreciseKUre: an approach of Precision Medicine in a Rare Disease.

Ottavia Spiga, Vittoria Cicaloni, Andrea Bernini, Andrea Zatkova, Annalisa Santucci

BMC Medical Informatics Decis. Mak., 2017

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria.

Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Giulia Bernardini, Neri Niccolai, Fabrizio Manetti, Annalisa Santucci

Comput. Biol. Chem., 2017

2013

ProCoCoA: A quantitative approach for analyzing protein core composition.

Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai

Comput. Biol. Chem., 2013

2005

Three-dimensional computation of atom depth in complex molecular structures.

Daniele Varrazzo, Andrea Bernini, Ottavia Spiga, Arianna Ciutti, Stefano Chiellini, Vincenzo Venditti, Luisa Bracci, Neri Niccolai

Bioinform., 2005