Anna Tramontano

Affiliations:
  • Sapienza University of Rome, Italy


According to our database1, Anna Tramontano authored at least 34 papers between 1986 and 2017.

Collaborative distances:

Timeline

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Bibliography

2017
PIGSPro: prediction of immunoGlobulin structures v2.
Nucleic Acids Res., 2017

2016
PepComposer: computational design of peptides binding to a given protein surface.
Nucleic Acids Res., 2016

Prediction of the permeability of neutral drugs inferred from their solvation properties.
Bioinform., 2016

2015
3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments.
Bioinform., 2015

Tabhu: tools for antibody humanization.
Bioinform., 2015

LoopIng: a template-based tool for predicting the structure of protein loops.
Bioinform., 2015

2014
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies.
Bioinform., 2014

2013
FIDEA: a server for the functional interpretation of differential expression analysis.
Nucleic Acids Res., 2013

ProCoCoA: A quantitative approach for analyzing protein core composition.
Comput. Biol. Chem., 2013

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server.
Bioinform., 2013

TiPs: a database of therapeutic targets in pathogens and associated tools.
Bioinform., 2013

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships.
Bioinform., 2013

2012
A database of immunoglobulins with integrated tools: DIGIT.
Nucleic Acids Res., 2012

A resource for benchmarking the usefulness of protein structure models.
BMC Bioinform., 2012

Improving your target-template alignment with MODalign.
Bioinform., 2012

2011
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Comput. Biol., 2011

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.
Nucleic Acids Res., 2011

Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether.
J. Chem. Inf. Model., 2011

MAISTAS: a tool for automatic structural evaluation of alternative splicing products.
Bioinform., 2011

2010
An automatic method for identifying surface proteins in bacteria: SLEP.
BMC Bioinform., 2010

PICMI: mapping point mutations on genomes.
Bioinform., 2010

Structural landscape of immunoglobulin lambda light chains.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Editorial.
Bioinform., 2009

2008
The MoVIN server for the analysis of protein interaction networks.
BMC Bioinform., 2008

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
BMC Bioinform., 2008

PIGS: automatic prediction of antibody structures.
Bioinform., 2008

Editorial.
Proceedings of the ECCB'08 Proceedings, 2008

2007
The MEPS server for identifying protein conformational epitopes.
BMC Bioinform., 2007

2006
The PMDB Protein Model Database.
Nucleic Acids Res., 2006

An analysis of the Sargasso Sea resource and the consequences for database composition.
BMC Bioinform., 2006

Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches.
Bioinform., 2006

2005
Evaluating the usefulness of protein structure models for molecular replacement.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2003
Evaluation of annotation strategies using an entire genome sequence.
Bioinform., 2003

1986
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics.
Nucleic Acids Res., 1986


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