Andrew D. Ellington

According to our database, Andrew D. Ellington authored at least 18 papers between 1997 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches.

Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington

Patterns, December, 2023

Mining Patents with Large Language Models Demonstrates Congruence of Functional Labels and Chemical Structures.

Clayton W. Kosonocky, Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington

CoRR, 2023

Prompt Engineering for Transformer-based Chemical Similarity Search Identifies Structurally Distinct Functional Analogues.

Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington

CoRR, 2023

HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing.

Tianlong Chen, Chengyue Gong, Daniel Jesus Diaz, Xuxi Chen, Jordan Tyler Wells, Qiang Liu, Zhangyang Wang, Andrew D. Ellington, Alex Dimakis, Adam R. Klivans

Proceedings of the Eleventh International Conference on Learning Representations, 2023

2019

Aptamers in Education: Undergraduates Make Aptamers and Acquire 21st Century Skills Along the Way.

Gwendolyn M. Stovall, Vincent Huynh, Shelly Engelman, Andrew D. Ellington

Sensors, 2019

2017

The Design Space of Strand Displacement Cascades with Toehold-Size Clamps.

Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik

Proceedings of the DNA Computing and Molecular Programming - 23rd International Conference, 2017

2014

Modeling scalable pattern generation in DNA reaction networks.

Peter B. Allen, Xi Chen, Zack B. Simpson, Andrew D. Ellington

Nat. Comput., 2014

2012

A fully-electronic charge-based DNA sequencing CMOS biochip.

Arun Manickam, Rituraj Singh, Nicholas Wood, Bingling Li, Andrew D. Ellington, Arjang Hassibi

Proceedings of the Symposium on VLSI Circuits, 2012

2010

A CMOS Electrochemical Impedance Spectroscopy (EIS) Biosensor Array.

Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi

IEEE Trans. Biomed. Circuits Syst., 2010

Emulsion Based Selection of T7 Promoters of Varying Activity.

Eric A. Davidson, Thomas Van Blarcom, Matthew Levy, Andrew D. Ellington

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

A CMOS electrochemical impedance spectroscopy biosensor array for label-free biomolecular detection.

Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi

Proceedings of the IEEE International Solid-State Circuits Conference, 2010

2009

Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes.

Xi Chen, Andrew D. Ellington

PLoS Comput. Biol., 2009

A CMOS fluorescent-based biosensor microarray.

Byungchul Jang, Peiyan Cao, Aaron Chevalier, Andrew D. Ellington, Arjang Hassibi

Proceedings of the IEEE International Solid-State Circuits Conference, 2009

2008

Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock.

Peng Yu, Xi Chen, David Z. Pan, Andrew D. Ellington

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2004

Aptamer Database.

Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, Andrew D. Ellington

Nucleic Acids Res., 2004

AANT: the Amino Aciduchleotide Interaction Database.

Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington

Nucleic Acids Res., 2004

1999

Designing and selecting components for nucleic acid computers.

Michael P. Robertson, Jay R. Hesselberth, J. Colin Cox, Andrew D. Ellington

Proceedings of the DNA Based Computers, 1999

1997

Strategies for DNA computing.

Andrew D. Ellington, Michael P. Robertson, Ken D. James, J. Colin Cox

Proceedings of the DNA Based Computers, 1997