Anthony J. Bonner

According to our database1, Anthony J. Bonner
  • authored at least 55 papers between 1983 and 2014.
  • has a "Dijkstra number"2 of four.

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Bibliography

2014
Planning with Transaction Logic.
Proceedings of the Web Reasoning and Rule Systems - 8th International Conference, 2014

2012
Finding MAPs using strongly equivalent high order recurrent symmetric connectionist networks.
Cognitive Systems Research, 2012

2011
Explaining Genetic Knock-Out Effects Using Cost-Based Abduction.
Proceedings of the IJCAI 2011, 2011

2010
Deep Supervised t-Distributed Embedding.
Proceedings of the 27th International Conference on Machine Learning (ICML-10), 2010

2009
Learned Random-Walk Kernels and Empirical-Map Kernels for Protein Sequence Classification.
Journal of Computational Biology, 2009

A Probabilistic Framework to Improve microRNA Target Prediction by Incorporating Proteomics Data.
J. Bioinformatics and Computational Biology, 2009

Large-Margin kNN Classification Using a Deep Encoder Network
CoRR, 2009

Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery.
Proceedings of the SIAM International Conference on Data Mining, 2009

Finding MAPs Using High Order Recurrent Networks.
Proceedings of the Neural Information Processing, 16th International Conference, 2009

A Deep Non-linear Feature Mapping for Large-Margin kNN Classification.
Proceedings of the ICDM 2009, 2009

2008
Neural networks approaches for discovering the learnable correlation between gene function and gene expression in mouse.
Neurocomputing, 2008

2007
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements.
BMC Bioinformatics, 2007

Modifying kernels using label information improves SVM classification performance.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

2006
Towards the Prediction of Protein Abundance from Tandem Mass Spectrometry Data.
Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression.
Proceedings of the Neural Information Processing, 13th International Conference, 2006

2004
Clustering Labeled Data and Cross-Validation for Classification with Few Positives in Yeast.
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), 2004

Comparison of discrimination methods for peptide classification in tandem mass spectrometry.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

2001
Query Languages for Sequence Databases: Termination and Complexity.
IEEE Trans. Knowl. Data Eng., 2001

Uniform integration of genome mapping data using intersection graphs.
Bioinformatics, 2001

2000
Querying Sequence Databases with Transducers.
Acta Inf., 2000

1999
Revealing hidden interval graph structure in STS-content data.
Bioinformatics, 1999

Workflow, Transactions, and Datalog.
Proceedings of the Eighteenth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, May 31, 1999

1998
Sequences, Datalog, and Transducers.
J. Comput. Syst. Sci., 1998

Results on Reasoning about Updates in Transaction Logic.
Proceedings of the Transactions and Change in Logic Databases, 1998

The State of Change: A Survey.
Proceedings of the Transactions and Change in Logic Databases, 1998

A Logic for Programming Database Transactions.
Proceedings of the Logics for Databases and Information Systems (the book grow out of the Dagstuhl Seminar 9529: Role of Logics in Information Systems, 1998

1997
A Logical Semantics for Hypothetical Rulebases with Deletion.
J. Log. Program., 1997

Intuitionistic Deductive Databases and the Polynomial Time Hierarchy.
J. Log. Program., 1997

Reusing and Modifying Rulebases by Predicate Substitution.
J. Comput. Syst. Sci., 1997

Workshop DYNAMICS 97: (Trans)Actions and Change in Logic Programming and Deductive Databases.
Proceedings of the Logic Programming, 1997

Querying String Databases with Transducers.
Proceedings of the Database Programming Languages, 6th International Workshop, 1997

Modular Composition of Transaction Programs with Deductive Databases.
Proceedings of the Database Programming Languages, 6th International Workshop, 1997

What Was Llull Up To?
Proceedings of the Transformation-Based Reactive Systems Development, 1997

1996
Sequence Datalog: Declarative String Manipulation in Databases.
Proceedings of the Logic in Databases, 1996

Good Maps Are Straight.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

Concurrency and Communication in Transaction Logic.
Proceedings of the Logic Programming, 1996

LabFlow-1: A Database Benchmark for High-Throughput Workflow Management.
Proceedings of the Advances in Database Technology, 1996

1995
Sequences, Datalog and Transducers.
Proceedings of the Fourteenth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1995

Finite Query Languages for Sequence Databases.
Proceedings of the Database Programming Languages (DBPL-5), 1995

1994
An Overview of Transaction Logic.
Theor. Comput. Sci., 1994

A Flexible Approach to Genome Map Assembly.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

Applications of Transaction Logic to Knowledge Representation.
Proceedings of the Temporal Logic, First International Conference, 1994

1993
Transaction Logic Programming.
Proceedings of the Logic Programming, 1993

Database Programming in Transaction Logic.
Proceedings of the Database Programming Languages (DBPL-4), Proceedings of the Fourth International Workshop on Database Programming Languages - Object Models and Languages, Manhattan, New York City, USA, 30 August, 1993

1992
The Complexity of Reusing and Modifying Rulebases.
Proceedings of the Eleventh ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1992

transaction Logic: An (Early) Exposé.
Proceedings of the Formal Methods in Databases and Software Engineering, 1992

1991
Objects and Views.
Proceedings of the 1991 ACM SIGMOD International Conference on Management of Data, 1991

1990
Hypothetical Datalog: Complexity and Expressibility.
Theor. Comput. Sci., 1990

Adding Negation-as-Failure to Intuitionistic Logic Programming.
Proceedings of the Logic Programming, Proceedings of the 1990 North American Conference, Austin, Texas, USA, October 29, 1990

The Reuse and Modification of Rulebases by Predicate Substituation.
Proceedings of the Advances in Database Technology, 1990

1989
Expressing Database Queries with Intuitionistic Logic.
Proceedings of the Logic Programming, 1989

Hypothetical Datalog: Negation and Linear Recursion.
Proceedings of the Eighth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1989

1988
Hypothetical Datalog: Complexity and Expressiblity.
Proceedings of the ICDT'88, 2nd International Conference on Database Theory, Bruges, Belgium, August 31, 1988

A Logic for Hypothetical Reasoning.
Proceedings of the 7th National Conference on Artificial Intelligence. St. Paul, 1988

1983
Machine analysis of acoustical signals.
Pattern Recognition, 1983


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