Quaid Morris

According to our database1, Quaid Morris authored at least 52 papers between 1996 and 2018.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2018
GeneMANIA update 2018.
Nucleic Acids Research, 2018

Reconstructing evolutionary trajectories of mutations in cancer.
Proceedings of the 6th International Conference on Learning Representations, 2018

2017
Reinterpreting Importance-Weighted Autoencoders.
Proceedings of the 5th International Conference on Learning Representations, 2017

2016
Session Introduction.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.
BMC Bioinformatics, 2015

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.
Bioinformatics, 2015

Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors.
CoRR, 2014

Inferring clonal evolution of tumors from single nucleotide somatic mutations.
BMC Bioinformatics, 2014

PLIDA: cross-platform gene expression normalization using perturbed topic models.
Bioinformatics, 2014

An Efficient Algorithm to Integrate Network and Attribute Data for Gene Function Prediction.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Session introduction.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013
A compendium of RNA-binding motifs for decoding gene regulation.
Nature, 2013

GeneMANIA Prediction Server 2013 Update.
Nucleic Acids Research, 2013

RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.
Nucleic Acids Research, 2013

Session introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

The Future of Genome-Based Medicine.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012
PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions.
PLoS Computational Biology, 2012

Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data
CoRR, 2012

Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study.
BMC Systems Biology, 2012

Mixture Model for Sub-Phenotyping in GWAS.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Session introduction.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011
RBPDB: a database of RNA-binding specificities.
Nucleic Acids Research, 2011

Computational purification of tumor gene expression data.
BMC Bioinformatics, 2011

Unsupervised detection of genes of influence in lung cancer using biological networks.
Bioinformatics, 2011

2010
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins.
PLoS Computational Biology, 2010

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Nucleic Acids Research, 2010

Fast integration of heterogeneous data sources for predicting gene function with limited annotation.
Bioinformatics, 2010

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.
Bioinformatics, 2010

Cytoscape Web: an interactive web-based network browser.
Bioinformatics, 2010

2009
ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing.
Bioinformatics, 2009

Predicting the binding preference of transcription factors to individual DNA k-mers.
Bioinformatics, 2009

Using the Gene Ontology Hierarchy when Predicting Gene Function.
Proceedings of the UAI 2009, 2009

Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008
Neural networks approaches for discovering the learnable correlation between gene function and gene expression in mouse.
Neurocomputing, 2008

Comparing Sequence and Expression for Predicting microRNA Targets Using GenMIR3.
Proceedings of the Biocomputing 2008, 2008

A mixture model for the evolution of gene expression in non-homogeneous datasets.
Proceedings of the Advances in Neural Information Processing Systems 21, 2008

2007
Bayesian Inference of MicroRNA Targets from Sequence and Expression Data.
Journal of Computational Biology, 2007

NIPS workshop on New Problems and Methods in Computational Biology.
BMC Bioinformatics, 2007

RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data.
Journal of Computational Biology, 2006

Inferring global levels of alternative splicing isoforms using a generative model of microarray data.
Bioinformatics, 2006

Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data.
Proceedings of the Research in Computational Molecular Biology, 2006

Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression.
Proceedings of the Neural Information Processing, 13th International Conference, 2006

2005
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model.
Proceedings of the Research in Computational Molecular Biology, 2005

GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data.
Proceedings of the Biocomputing 2005, 2005

GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

Multi-way clustering of microarray data using probabilistic sparse matrix factorization.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004
Probabilistic Inference of Alternative Splicing Events in Microarray Data.
Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004

2003
Denoising and Untangling Graphs Using Degree Priors.
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003

2001
Recognition Networks for Approximate Inference in BN20 Networks.
Proceedings of the UAI '01: Proceedings of the 17th Conference in Uncertainty in Artificial Intelligence, 2001

1996
A Maximum-Likelihood Approach to Visual Event Classification.
Proceedings of the Computer Vision, 1996


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